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Statistics of Affymetrix and Custom CDF Files (Version 10)
Table 1: Probe utilization
Species | Chip | Probe count | UG (%) | REFSEQ (%) | ENTREZG (%) | ENSG (%) | ENST (%) | ENSE (%) | VEGAG (%) | VEGAT (%) | VEGAE (%) | TAIR (%) |
Arabidopsis thaliana | AtGenome | 130858 | NA | 89.2 | NA | NA | NA | NA | NA | NA | NA | 89.3 |
Arabidopsis thaliana | AtH1 | 250103 | NA | 90.3 | NA | NA | NA | NA | NA | NA | NA | 90.7 |
Arabidopsis thaliana | Arabidopsis Tiling 1.0R Array | 3130523 | NA | 15.7 | NA | NA | NA | NA | NA | NA | NA | 15.8 |
Bos taurus | Bovine | 264126 | 58.3 | 50.4 | 43.9 | 31.1 | 35.9 | 27 | NA | NA | NA | NA |
Canis familiaris | CfCanine2 | 471650 | 38.6 | 2.3 | 50.8 | 46.6 | 53.2 | 38.9 | NA | .1 | NA | NA |
Drosophila melanogaster | DmDrosophila2 | 262766 | 76 | 76.5 | NA | 73.4 | 76.4 | 72.3 | NA | NA | NA | NA |
Drosophila melanogaster | DmGenome1 | 195186 | 92.9 | 93.3 | NA | 92.4 | 93.2 | 90.6 | NA | NA | NA | NA |
Danio rerio | DrZebrafish | 248013 | 54.4 | 56.7 | 39.6 | 34.6 | 38.6 | 32.4 | NA | 26.9 | NA | NA |
Gallus gallus | GgChicken | 422825 | 52.9 | 14 | 43.1 | 38 | 43.4 | 32.1 | NA | NA | NA | NA |
Homo sapiens | Hs133A | 246799 | 68.5 | 72.4 | 67.5 | 68 | 71.2 | 63.3 | 66.7 | 71.3 | 62.7 | NA |
Homo sapiens | Hs133Av2 | 246799 | 68.5 | 72.4 | 67.5 | 68 | 71.2 | 63.3 | 66.7 | 71.3 | 62.7 | NA |
Homo sapiens | Hs133B | 248336 | 53.5 | 34.5 | 30.7 | 33 | 34.2 | 31.4 | 38.3 | 40.7 | 36.7 | NA |
Homo sapiens | Hs133P | 603158 | 57.5 | 48.3 | 44.5 | 46 | 48.1 | 43.2 | 49.4 | 53 | 46.9 | NA |
Homo sapiens | Hs133X | 672804 | 55.1 | 46.3 | 43.2 | 44.6 | 45.9 | 43.7 | 48.4 | 51.3 | 47.6 | NA |
Homo sapiens | Hs95Av2 | 197695 | 71 | 75.1 | 70.2 | 70.5 | 73.6 | 68.5 | 68.8 | 73.1 | 67 | NA |
Homo sapiens | HsEx10stv2 | 5383654 | 28.2 | 22 | 21.6 | 21.8 | 21.5 | 21.6 | 23.7 | 24.4 | 23.5 | NA |
Homo sapiens | HsFocus | 97349 | 76.4 | 84.9 | 79.6 | 78.5 | 82.1 | 72.2 | 75.2 | 80.1 | 69.7 | NA |
Homo sapiens | HsNuGOHs1a520180 | 264407 | 69 | 69.9 | 65.6 | 69.7 | 72.6 | 65.7 | 65.6 | 69.6 | 62.2 | NA |
Homo sapiens | Chromosome 21/22 1.0 Array Set A | 333692 | 1.4 | .6 | .6 | .5 | .5 | .5 | 1.2 | 1.2 | 1.1 | NA |
Homo sapiens | Chromosome 21/22 1.0 Array Set B | 333665 | 5.2 | 2.5 | 2.6 | 2.8 | 2.8 | 2.5 | 4.5 | 4.5 | 4.2 | NA |
Homo sapiens | Chromosome 21/22 1.0 Array Set C | 334361 | 5.2 | 2.8 | 2.7 | 3 | 3 | 2.7 | 3.6 | 3.7 | 3.3 | NA |
Homo sapiens | Chromosome 21/22 2.0R Array | 2243201 | 4.3 | 2.4 | 2.3 | 2.2 | 2.2 | 2.2 | 3.3 | 3.3 | 3.3 | NA |
Homo sapiens | ENCODE 2.0R Array | 2214280 | 5.4 | 3.3 | 3 | 3.2 | 3.2 | 3.2 | 5.1 | 5.1 | 5.1 | NA |
Homo sapiens | Human Promoter 1.0R Array | 4356207 | 9 | 5.1 | 4.9 | 4.8 | 4.9 | 4.5 | 5.7 | 5.9 | 5.4 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 01 | 3104980 | 4.1 | 2.1 | 2 | 2.3 | 2.4 | 2.2 | 3.2 | 3.2 | 3 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 02 | 3104956 | 2.9 | 1.3 | 1.3 | 1.2 | 1.2 | 1.1 | .9 | 1 | .8 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 03 | 3104959 | 3.3 | 1.6 | 1.5 | 1.4 | 1.4 | 1.3 | 1.7 | 1.7 | 1.6 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 04 | 3104968 | 2.5 | 1.2 | 1.1 | 1 | 1 | .9 | .8 | .9 | .8 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 05 | 3104992 | 2.7 | 1.2 | 1.1 | 1.1 | 1.1 | 1 | .9 | .9 | .8 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 06 | 3104962 | 3.2 | 1.5 | 1.4 | 1.5 | 1.5 | 1.4 | 1.9 | 2 | 1.7 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 07 | 3104969 | 2.7 | 1.3 | 1.2 | 1.2 | 1.2 | 1.1 | 1.4 | 1.7 | 1.3 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 08 | 3105007 | 3.1 | 1.5 | 1.4 | 1.6 | 1.6 | 1.5 | 2.1 | 2.1 | 2 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 09 | 3104992 | 3.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.2 | 1.3 | 1.1 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 10 | 3104992 | 3.2 | 1.6 | 1.5 | 1.5 | 1.5 | 1.3 | 2 | 2 | 1.8 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 11 | 3104964 | 3.8 | 1.9 | 1.8 | 1.7 | 1.7 | 1.5 | 2.4 | 2.4 | 2.2 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 12 | 3104966 | 4.1 | 2.2 | 2.1 | 2 | 2 | 1.8 | 2.8 | 2.9 | 2.6 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 13 | 3104957 | 4.5 | 2.7 | 2.6 | 2.6 | 2.6 | 2.4 | 3.5 | 3.5 | 3.2 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 14 | 1487440 | 2.2 | 1.5 | 1.4 | 1.5 | 1.5 | 1.4 | 2.2 | 2.2 | 2.1 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 01 | 6020961 | 3.7 | 1.9 | 1.8 | 2 | 2 | 1.8 | 2.7 | 2.7 | 2.5 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 02 | 6190329 | 3.7 | 2 | 1.9 | 1.9 | 1.9 | 1.7 | 1.9 | 2 | 1.8 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 03 | 6109114 | 3.1 | 1.6 | 1.6 | 1.5 | 1.5 | 1.4 | 2.2 | 2.2 | 2 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 04 | 6199162 | 2.9 | 1.4 | 1.3 | 1.3 | 1.3 | 1.2 | 1.5 | 1.5 | 1.4 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 05 | 6251118 | 3.1 | 1.5 | 1.4 | 1.4 | 1.4 | 1.2 | 1.4 | 1.7 | 1.3 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 06 | 6124067 | 3.5 | 1.8 | 1.7 | 1.6 | 1.7 | 1.5 | 1.6 | 1.7 | 1.5 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 07 | 6090639 | 3.6 | 1.8 | 1.8 | 1.8 | 1.8 | 1.6 | 2.5 | 2.5 | 2.3 | NA |
Macaca mulatta | Rhesus | 667186 | 17.5 | .6 | 48.2 | 36.3 | 37.1 | 34.4 | NA | NA | NA | NA |
Mus musculus | Mm11KsubA | 130180 | 62.9 | 64.3 | 60.8 | 56.1 | 58.5 | 55 | 30.4 | 31.6 | 29.9 | NA |
Mus musculus | Mm11KsubB | 118480 | 49.2 | 51.8 | 46.3 | 44.7 | 49.8 | 43.1 | 22.7 | 25.1 | 22 | NA |
Mus musculus | Mm430 | 495374 | 60.2 | 52.3 | 48.9 | 45.9 | 48.5 | 42.8 | 27.2 | 28.5 | 25.9 | NA |
Mus musculus | Mm430A | 248864 | 72.9 | 73.3 | 68.8 | 65.1 | 69.2 | 60.3 | 35.2 | 37.2 | 33.2 | NA |
Mus musculus | Mouse Genome 430A 2.0 | 248864 | 72.9 | 73.3 | 68.8 | 65.1 | 69.2 | 60.3 | 35.2 | 37.2 | 33.2 | NA |
Mus musculus | Mm430B | 247610 | 47.4 | 31.2 | 29 | 26.5 | 27.7 | 25.1 | 19.1 | 19.7 | 18.5 | NA |
Mus musculus | Mm74Av1 | 200641 | 56.2 | 56.3 | 52.8 | 49.3 | 52.4 | 47.5 | 26.4 | 27.8 | 25.7 | NA |
Mus musculus | Mm74Av2 | 196670 | 62.6 | 64.1 | 60.2 | 56.1 | 59.6 | 54.2 | 30.2 | 31.9 | 29.5 | NA |
Mus musculus | Mm74Bv2 | 195808 | 61.1 | 51.7 | 48.9 | 44.7 | 46.6 | 43.6 | 27.7 | 28.6 | 27.3 | NA |
Mus musculus | Mm74Cv2 | 181474 | 34.2 | 20.8 | 19.9 | 17.7 | 18.2 | 17.4 | 12.6 | 12.9 | 12.5 | NA |
Mus musculus | MmEx10stv1 | 4737634 | 27.9 | 22.4 | 22 | 21.2 | 21.3 | 20.9 | 13 | 13 | 12.9 | NA |
Mus musculus | MmNuGOMm1a520177 | 261635 | 65.4 | 64 | 60.2 | 58.5 | 61.9 | 54.2 | 30.5 | 32 | 28.7 | NA |
Mus musculus | Mouse Promoter 1.0R Array | 4369636 | 7.9 | 5.1 | 4.9 | 4.4 | 4.5 | 4.1 | 3.1 | 3.1 | 2.9 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 01 | 3076926 | 2.9 | 1.7 | 1.6 | 1.4 | 1.4 | 1.3 | .9 | .9 | .8 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 02 | 3161633 | 3.6 | 2.1 | 2.1 | 1.9 | 2 | 1.8 | 3 | 3 | 2.8 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 03 | 2534803 | 2.7 | 1.5 | 1.5 | 1.4 | 1.4 | 1.3 | .8 | .8 | .8 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 04 | 2565519 | 3.2 | 1.9 | 1.9 | 1.8 | 1.8 | 1.6 | 2.6 | 2.6 | 2.5 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 05 | 3153176 | 1.8 | 1.8 | 1.3 | 1 | 1.2 | .9 | 1.4 | 1.4 | 1.3 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 06 | 3166201 | 2.8 | 1.6 | 1.6 | 1.4 | 1.4 | 1.3 | 1.1 | 1.1 | 1 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 07 | 3123189 | 3.9 | 2.5 | 2.4 | 2.2 | 2.2 | 2 | 1 | 1 | .9 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 08 | 3050130 | 2.7 | 1.4 | 1.4 | 1.3 | 1.3 | 1.1 | .4 | .4 | .4 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 09 | 3155691 | 3.1 | 1.8 | 1.7 | 1.5 | 1.5 | 1.4 | .4 | .4 | .4 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 10 | 3048063 | 3.1 | 1.8 | 1.8 | 1.6 | 1.6 | 1.4 | .6 | .6 | .5 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 11 | 3167200 | 3.9 | 2.4 | 2.3 | 2.2 | 2.2 | 2 | 2.6 | 2.6 | 2.4 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 12 | 3165843 | 3.4 | 2.1 | 2 | 1.8 | 1.8 | 1.6 | .5 | .5 | .5 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 13 | 3083184 | 2.7 | 1.5 | 1.4 | 1.3 | 1.3 | 1.2 | .7 | .7 | .6 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 14 | 3146417 | 3.2 | 1.9 | 1.8 | 1.6 | 1.6 | 1.5 | 1 | 1 | .9 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 01 | 5888394 | 3.3 | 1.9 | 1.8 | 1.6 | 1.6 | 1.5 | .6 | .6 | .6 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 02 | 6098981 | 2.6 | 1.9 | 1.7 | 1.4 | 1.5 | 1.3 | 2.2 | 2.2 | 2.1 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 03 | 5883598 | 3 | 1.8 | 1.7 | 1.6 | 1.6 | 1.5 | .8 | .8 | .7 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 04 | 5865723 | 3.6 | 2.2 | 2.2 | 2.1 | 2.1 | 1.9 | 2.5 | 2.5 | 2.3 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 05 | 5792498 | 2.9 | 1.7 | 1.7 | 1.5 | 1.5 | 1.3 | .6 | .7 | .6 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 06 | 5888478 | 2.9 | 1.6 | 1.5 | 1.4 | 1.4 | 1.3 | .8 | .8 | .8 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 07 | 5669507 | 2.7 | 1.6 | 1.5 | 1.4 | 1.4 | 1.2 | .5 | .5 | .4 | NA |
Oryza sativa | OsRice | 629427 | NA | 45.8 | NA | NA | NA | NA | NA | NA | NA | NA |
Pan troglodytes | Hs133A | 246799 | NA | 72.8 | 49.5 | 46 | 49.6 | 41.5 | NA | NA | NA | NA |
Pan troglodytes | Hs133Av2 | 246799 | NA | 72.8 | 49.5 | 46 | 49.6 | 41.5 | NA | NA | NA | NA |
Pan troglodytes | Hs133B | 248336 | NA | 33.2 | 27.6 | 20.6 | 21.9 | 18.9 | NA | NA | NA | NA |
Pan troglodytes | Hs133P | 603158 | NA | 47.7 | 35 | 30.3 | 32.6 | 27.5 | NA | NA | NA | NA |
Pan troglodytes | Hs133X | 672804 | NA | 45.7 | 33.7 | 28.6 | 30.3 | 27.7 | NA | NA | NA | NA |
Pan troglodytes | Hs95Av2 | 197695 | NA | 75.6 | 52.4 | 48 | 51.3 | 46 | NA | NA | NA | NA |
Pan troglodytes | HsEx10stv2 | 5383654 | NA | 21 | 18.6 | 16.2 | 16.4 | 15.4 | NA | NA | NA | NA |
Pan troglodytes | HsFocus | 97349 | NA | 85.6 | 55.7 | 53 | 57.1 | 47 | NA | NA | NA | NA |
Pan troglodytes | HsNuGOHs1a520180 | 264407 | NA | 68.3 | 48.5 | 44.5 | 47.8 | 40.5 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 1.0 Array Set A | 333692 | NA | .6 | .6 | .4 | .4 | .4 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 1.0 Array Set B | 333665 | NA | 2.5 | 2.4 | 1.8 | 1.8 | 1.5 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 1.0 Array Set C | 334361 | NA | 2.8 | 2.2 | 2 | 2 | 1.7 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 2.0R Array | 2243201 | NA | 2.3 | 1.9 | 1.5 | 1.6 | 1.5 | NA | NA | NA | NA |
Pan troglodytes | ENCODE 2.0R Array | 2214280 | NA | 3.3 | 2.7 | 2.1 | 2.1 | 2.1 | NA | NA | NA | NA |
Pan troglodytes | Human Promoter 1.0R Array | 4356207 | NA | 4.7 | 4.6 | 3.2 | 3.3 | 2.9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 01 | 3104980 | NA | 2 | 1.9 | 1.5 | 1.5 | 1.3 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 02 | 3104956 | NA | 1.3 | 1.3 | .9 | 1 | .8 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 03 | 3104959 | NA | 1.5 | 1.4 | 1.1 | 1.1 | .9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 04 | 3104968 | NA | 1.1 | 1.1 | .8 | .8 | .7 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 05 | 3104992 | NA | 1.1 | 1.1 | .8 | .8 | .7 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 06 | 3104962 | NA | 1.4 | 1.3 | 1 | 1.1 | .9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 07 | 3104969 | NA | 1.3 | 1.3 | .9 | .9 | .8 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 08 | 3105007 | NA | 1.5 | 1.4 | 1 | 1.1 | .9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 09 | 3104992 | NA | 1.7 | 1.7 | 1.2 | 1.3 | 1.1 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 10 | 3104992 | NA | 1.5 | 1.5 | 1.1 | 1.1 | .9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 11 | 3104964 | NA | 1.8 | 1.7 | 1.3 | 1.4 | 1.2 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 12 | 3104966 | NA | 2.1 | 2 | 1.5 | 1.5 | 1.3 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 13 | 3104957 | NA | 2.6 | 2.1 | 1.7 | 1.7 | 1.4 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 14 | 1487440 | NA | 1.5 | 1.2 | .8 | .8 | .7 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 01 | 6020961 | NA | 1.8 | 1.7 | 1.3 | 1.3 | 1.1 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 02 | 6190329 | NA | 1.9 | 1.7 | 1.3 | 1.3 | 1.1 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 03 | 6109114 | NA | 1.6 | 1.4 | 1 | 1.1 | .9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 04 | 6199162 | NA | 1.3 | 1.3 | 1 | 1 | .8 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 05 | 6251118 | NA | 1.5 | 1.4 | 1 | 1 | .9 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 06 | 6124067 | NA | 1.7 | 1.6 | 1.2 | 1.2 | 1 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 07 | 6090639 | NA | 1.7 | 1.7 | 1.2 | 1.3 | 1.1 | NA | NA | NA | NA |
Rattus norvegicus | Rn230 | 341459 | 64.5 | 45.9 | 40.3 | 31.8 | 33.8 | 28.6 | NA | NA | NA | NA |
Rattus norvegicus | Rn230A | 174526 | 69.7 | 60.5 | 53.6 | 44 | 46.7 | 39.4 | NA | NA | NA | NA |
Rattus norvegicus | Rn230B | 168033 | 59.2 | 30.8 | 26.6 | 19.1 | 20.3 | 17.5 | NA | NA | NA | NA |
Rattus norvegicus | Rn34A | 139137 | 64.6 | 63.5 | 54.6 | 48.9 | 52.8 | 46.3 | NA | NA | NA | NA |
Rattus norvegicus | RnEx10stv1 | 4027776 | 23.5 | 22.8 | 21.5 | 21.6 | 21.6 | 21.3 | NA | NA | NA | NA |
Table 2. Target Count for Affymetrix and Custom Probe Sets
Species | Chip | Affy-UG1 | Affy-ENSG2 | Affy-REFSEQ3 | UG | REFSEQ | ENTREZG | ENSG | ENST | ENSE | VEGAG | VEGAT | VEGAE | TAIR |
Arabidopsis thaliana | AtGenome | 1281 | NA | 7336 | NA | 8940 | NA | NA | NA | NA | NA | NA | NA | 7214 |
Arabidopsis thaliana | AtH1 | NA | NA | 21684 | NA | 25254 | NA | NA | NA | NA | NA | NA | NA | 21025 |
Arabidopsis thaliana | Arabidopsis Tiling 1.0R Array | NA | NA | NA | NA | 15565 | NA | NA | NA | NA | NA | NA | NA | 13400 |
Bos taurus | Bovine | 16306 | 5260 | 10373 | 11920 | 11289 | 9428 | 7493 | 10245 | 11245 | NA | NA | NA | NA |
Canis familiaris | CfCanine2 | 15542 | 16612 | 17002 | 12969 | 775 | 15771 | 16504 | 21922 | 31933 | NA | 58 | NA | NA |
Drosophila melanogaster | DmDrosophila2 | NA | 13636 | 13648 | 13490 | 19293 | NA | 13413 | 19099 | 20479 | NA | NA | NA | NA |
Drosophila melanogaster | DmGenome1 | NA | 12169 | 12208 | 12091 | 17582 | NA | 12103 | 17377 | 20475 | NA | NA | NA | NA |
Danio rerio | DrZebrafish | 12459 | 5458 | 8575 | 8922 | 11587 | 6943 | 6071 | 8265 | 10092 | NA | 5264 | NA | NA |
Gallus gallus | GgChicken | 17149 | 12172 | 12309 | 16872 | 3954 | 12495 | 11998 | 16530 | 23711 | NA | NA | NA | NA |
Homo sapiens | Hs133A | 13103 | 11984 | 13280 | 11845 | 17531 | 11961 | 11834 | 23740 | 22299 | 13125 | 34000 | 29156 | NA |
Homo sapiens | Hs133Av2 | 13042 | 11984 | 13280 | 11845 | 17531 | 11961 | 11834 | 23740 | 22299 | 13125 | 34000 | 29156 | NA |
Homo sapiens | Hs133B | 15217 | 6431 | 10492 | 10843 | 8729 | 6079 | 6290 | 11350 | 10709 | 7904 | 17156 | 15040 | NA |
Homo sapiens | Hs133P | 29584 | 17322 | 20483 | 22182 | 25004 | 17527 | 17215 | 33977 | 34541 | 20083 | 51010 | 47113 | NA |
Homo sapiens | Hs133X | 29475 | 17353 | 20609 | 21804 | 24755 | 17386 | 17031 | 32939 | 31612 | 19928 | 48516 | 42941 | NA |
Homo sapiens | Hs95Av2 | 7863 | 8297 | 9077 | 8159 | 12260 | 8135 | 8065 | 15996 | 14844 | 8929 | 22395 | 19335 | NA |
Homo sapiens | HsEx10stv2 | NA | NA | NA | 52928 | 35243 | 23851 | 26116 | 41624 | 232705 | 30839 | 84754 | 315922 | NA |
Homo sapiens | HsFocus | 8068 | 7764 | 8494 | 7484 | 11530 | 7815 | 7676 | 14751 | 12015 | 8533 | 20711 | 15301 | NA |
Homo sapiens | HsNuGOHs1a520180 | NA | NA | NA | 16650 | 22669 | 16242 | 17158 | 29820 | 25957 | 18033 | 39305 | 31280 | NA |
Homo sapiens | Chromosome 21/22 1.0 Array Set A | NA | NA | NA | 266 | 68 | 48 | 39 | 70 | 171 | 111 | 258 | 475 | NA |
Homo sapiens | Chromosome 21/22 1.0 Array Set B | NA | NA | NA | 556 | 260 | 232 | 189 | 325 | 886 | 425 | 927 | 1792 | NA |
Homo sapiens | Chromosome 21/22 1.0 Array Set C | NA | NA | NA | 529 | 250 | 165 | 177 | 293 | 905 | 256 | 428 | 1123 | NA |
Homo sapiens | Chromosome 21/22 2.0R Array | NA | NA | NA | 1527 | 669 | 445 | 438 | 688 | 3358 | 756 | 1660 | 5707 | NA |
Homo sapiens | ENCODE 2.0R Array | NA | NA | NA | 832 | 371 | 239 | 242 | 625 | 2709 | 458 | 1977 | 6200 | NA |
Homo sapiens | Human Promoter 1.0R Array | NA | NA | NA | 16157 | 13943 | 9559 | 9207 | 17166 | 24131 | 10684 | 27462 | 35177 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 01 | NA | NA | NA | 3754 | 1714 | 1125 | 999 | 2645 | 8602 | 1744 | 5703 | 13864 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 02 | NA | NA | NA | 3076 | 997 | 666 | 595 | 996 | 4117 | 435 | 809 | 2949 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 03 | NA | NA | NA | 3252 | 1096 | 726 | 625 | 1056 | 4814 | 809 | 2195 | 6701 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 04 | NA | NA | NA | 2766 | 891 | 602 | 505 | 835 | 3380 | 378 | 866 | 2746 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 05 | NA | NA | NA | 3129 | 935 | 619 | 518 | 946 | 3473 | 378 | 729 | 2466 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 06 | NA | NA | NA | 3271 | 1244 | 815 | 728 | 1918 | 5531 | 1323 | 4343 | 7044 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 07 | NA | NA | NA | 3106 | 1149 | 683 | 605 | 1004 | 3633 | 1089 | 2787 | 5210 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 08 | NA | NA | NA | 3197 | 1169 | 773 | 737 | 1798 | 5593 | 1234 | 3390 | 7991 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 09 | NA | NA | NA | 3636 | 1558 | 1033 | 971 | 1787 | 6096 | 676 | 2181 | 4974 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 10 | NA | NA | NA | 3175 | 1200 | 821 | 723 | 1232 | 5059 | 1107 | 3113 | 7729 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 11 | NA | NA | NA | 3716 | 1464 | 1072 | 898 | 1429 | 5963 | 1658 | 4059 | 12018 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 12 | NA | NA | NA | 3986 | 1810 | 1220 | 1075 | 1669 | 6973 | 1865 | 5393 | 14763 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 13 | NA | NA | NA | 4277 | 2218 | 1532 | 1505 | 2679 | 8684 | 2228 | 5412 | 12744 | NA |
Homo sapiens | Human Tiling 1.0R Array Set 14 | NA | NA | NA | 998 | 642 | 397 | 356 | 866 | 2501 | 737 | 1762 | 3875 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 01 | NA | NA | NA | 6978 | 3005 | 2015 | 1789 | 4761 | 14412 | 3128 | 10290 | 21608 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 02 | NA | NA | NA | 7154 | 3066 | 2151 | 2021 | 3685 | 12984 | 2168 | 5513 | 13814 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 03 | NA | NA | NA | 6053 | 2617 | 1702 | 1546 | 2932 | 10120 | 2599 | 6762 | 16548 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 04 | NA | NA | NA | 6282 | 2286 | 1511 | 1336 | 2454 | 8971 | 1816 | 4762 | 12884 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 05 | NA | NA | NA | 6693 | 2623 | 1692 | 1508 | 2496 | 9275 | 1987 | 4689 | 11305 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 06 | NA | NA | NA | 6867 | 2912 | 1929 | 1796 | 2897 | 10636 | 1666 | 5499 | 12457 | NA |
Homo sapiens | Human Tiling 2.0R Array Set 07 | NA | NA | NA | 7078 | 2945 | 2044 | 1782 | 3411 | 11725 | 3248 | 9494 | 22674 | NA |
Macaca mulatta | Rhesus | NA | NA | NA | 5931 | 322 | 16002 | 13925 | 23940 | 29321 | NA | NA | NA | NA |
Mus musculus | Mm11KsubA | 2149 | 4137 | 5186 | 4366 | 5675 | 4255 | 3994 | 5159 | 6049 | 2127 | 4836 | 4875 | NA |
Mus musculus | Mm11KsubB | 2532 | 3063 | 3544 | 2768 | 3765 | 2833 | 2765 | 3709 | 5486 | 1367 | 3978 | 4520 | NA |
Mus musculus | Mm430 | 23598 | 15726 | 20500 | 19444 | 21561 | 16475 | 15768 | 21037 | 25438 | 7921 | 20174 | 20657 | NA |
Mus musculus | Mm430A | 13395 | 11885 | 13568 | 12370 | 15534 | 12175 | 11723 | 15718 | 18765 | 5747 | 15036 | 14936 | NA |
Mus musculus | Mouse Genome 430A 2.0 | 13395 | 11885 | 13568 | 12370 | 15534 | 12175 | 11723 | 15718 | 18765 | 5747 | 15036 | 14936 | NA |
Mus musculus | Mm430B | 13060 | 5494 | 11325 | 9327 | 7917 | 5716 | 5400 | 6878 | 7688 | 3425 | 6845 | 6737 | NA |
Mus musculus | Mm74Av1 | 8199 | 6964 | 8887 | 7318 | 9026 | 7004 | 6676 | 8707 | 10239 | 3383 | 8010 | 8045 | NA |
Mus musculus | Mm74Av2 | 8198 | 7712 | 9059 | 7786 | 9981 | 7737 | 7374 | 9621 | 11323 | 3753 | 8921 | 8961 | NA |
Mus musculus | Mm74Bv2 | 8701 | 5562 | 7818 | 7001 | 7233 | 5645 | 5295 | 6835 | 7899 | 3003 | 6677 | 6626 | NA |
Mus musculus | Mm74Cv2 | 6840 | 3519 | 6391 | 4502 | 3738 | 2721 | 2454 | 3084 | 3102 | 1644 | 3114 | 2878 | NA |
Mus musculus | MmEx10stv1 | NA | NA | NA | 38321 | 35232 | 24444 | 22927 | 30211 | 198757 | 12906 | 40421 | 162329 | NA |
Mus musculus | MmNuGOMm1a520177 | NA | NA | NA | 16349 | 20091 | 15415 | 15297 | 18866 | 20077 | 7580 | 15581 | 14472 | NA |
Mus musculus | Mouse Promoter 1.0R Array | NA | NA | NA | 13892 | 14225 | 9881 | 9739 | 12482 | 21009 | 5009 | 13560 | 19411 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 01 | NA | NA | NA | 2230 | 1266 | 861 | 833 | 1082 | 4723 | 335 | 1177 | 3169 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 02 | NA | NA | NA | 2731 | 1650 | 1213 | 1201 | 1689 | 6609 | 1561 | 4532 | 11833 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 03 | NA | NA | NA | 1936 | 1087 | 760 | 725 | 907 | 3563 | 291 | 1102 | 2478 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 04 | NA | NA | NA | 2063 | 1322 | 916 | 900 | 1242 | 5023 | 1187 | 3286 | 8362 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 05 | NA | NA | NA | 1675 | 2844 | 1280 | 929 | 1328 | 3372 | 981 | 2193 | 4660 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 06 | NA | NA | NA | 2489 | 1471 | 1060 | 1001 | 1262 | 4772 | 525 | 1696 | 4295 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 07 | NA | NA | NA | 3182 | 2309 | 1657 | 1578 | 1970 | 7521 | 501 | 1806 | 4447 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 08 | NA | NA | NA | 2200 | 1180 | 836 | 842 | 1039 | 4403 | 206 | 727 | 1810 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 09 | NA | NA | NA | 2488 | 1391 | 985 | 980 | 1228 | 5187 | 172 | 662 | 1744 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 10 | NA | NA | NA | 2479 | 1420 | 1027 | 1001 | 1255 | 5559 | 211 | 889 | 2408 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 11 | NA | NA | NA | 3086 | 1875 | 1365 | 1331 | 1915 | 8107 | 1361 | 3830 | 10615 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 12 | NA | NA | NA | 2718 | 1785 | 1228 | 1198 | 1534 | 6313 | 236 | 861 | 2131 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 13 | NA | NA | NA | 2247 | 1219 | 855 | 839 | 1047 | 4262 | 266 | 964 | 2521 | NA |
Mus musculus | Mouse Tiling 1.1R Array Set 14 | NA | NA | NA | 2626 | 1591 | 1129 | 1091 | 1406 | 5652 | 409 | 1693 | 4307 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 01 | NA | NA | NA | 4758 | 2723 | 1906 | 1862 | 2367 | 10392 | 437 | 1544 | 4344 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 02 | NA | NA | NA | 4091 | 4293 | 2344 | 1975 | 2819 | 9305 | 2457 | 6388 | 15802 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 03 | NA | NA | NA | 4781 | 3064 | 2156 | 2053 | 2556 | 9822 | 704 | 2552 | 6205 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 04 | NA | NA | NA | 5272 | 3428 | 2409 | 2344 | 3308 | 13775 | 2507 | 6922 | 18635 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 05 | NA | NA | NA | 4404 | 2591 | 1810 | 1769 | 2258 | 9311 | 498 | 2017 | 5224 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 06 | NA | NA | NA | 4513 | 2556 | 1820 | 1767 | 2197 | 9012 | 634 | 2332 | 6337 | NA |
Mus musculus | Mouse Tiling 2.0R Array Set 07 | NA | NA | NA | 4117 | 2352 | 1676 | 1594 | 2010 | 8714 | 426 | 1312 | 3390 | NA |
Oryza sativa | OsRice | 23634 | NA | 2339 | NA | 24015 | NA | NA | NA | NA | NA | NA | NA | NA |
Pan troglodytes | Hs133A | NA | NA | NA | NA | 17603 | 10628 | 10213 | 16710 | 16213 | NA | NA | NA | NA |
Pan troglodytes | Hs133Av2 | NA | NA | NA | NA | 17603 | 10628 | 10213 | 16710 | 16213 | NA | NA | NA | NA |
Pan troglodytes | Hs133B | NA | NA | NA | NA | 7906 | 6328 | 5077 | 7581 | 7307 | NA | NA | NA | NA |
Pan troglodytes | Hs133P | NA | NA | NA | NA | 23944 | 15906 | 14862 | 24024 | 24863 | NA | NA | NA | NA |
Pan troglodytes | Hs133X | NA | NA | NA | NA | 23695 | 15549 | 14362 | 22860 | 23135 | NA | NA | NA | NA |
Pan troglodytes | Hs95Av2 | NA | NA | NA | NA | 12400 | 7307 | 6869 | 10965 | 11029 | NA | NA | NA | NA |
Pan troglodytes | HsEx10stv2 | NA | NA | NA | NA | 25954 | 24675 | 20457 | 31837 | 175435 | NA | NA | NA | NA |
Pan troglodytes | HsFocus | NA | NA | NA | NA | 11827 | 6716 | 6489 | 9964 | 8515 | NA | NA | NA | NA |
Pan troglodytes | HsNuGOHs1a520180 | NA | NA | NA | NA | 21542 | 14715 | 14050 | 20382 | 18112 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 1.0 Array Set A | NA | NA | NA | NA | 52 | 52 | 41 | 66 | 152 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 1.0 Array Set B | NA | NA | NA | NA | 249 | 211 | 143 | 253 | 703 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 1.0 Array Set C | NA | NA | NA | NA | 229 | 172 | 166 | 260 | 665 | NA | NA | NA | NA |
Pan troglodytes | Chromosome 21/22 2.0R Array | NA | NA | NA | NA | 613 | 520 | 429 | 685 | 2996 | NA | NA | NA | NA |
Pan troglodytes | ENCODE 2.0R Array | NA | NA | NA | NA | 358 | 309 | 238 | 414 | 2047 | NA | NA | NA | NA |
Pan troglodytes | Human Promoter 1.0R Array | NA | NA | NA | NA | 11797 | 9672 | 7876 | 12268 | 16748 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 01 | NA | NA | NA | NA | 1327 | 1270 | 969 | 1868 | 5903 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 02 | NA | NA | NA | NA | 725 | 767 | 566 | 855 | 3340 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 03 | NA | NA | NA | NA | 794 | 827 | 600 | 965 | 3941 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 04 | NA | NA | NA | NA | 627 | 686 | 486 | 724 | 2632 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 05 | NA | NA | NA | NA | 669 | 737 | 504 | 763 | 2721 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 06 | NA | NA | NA | NA | 908 | 910 | 666 | 1215 | 3832 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 07 | NA | NA | NA | NA | 880 | 893 | 589 | 941 | 3040 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 08 | NA | NA | NA | NA | 960 | 945 | 665 | 1327 | 3741 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 09 | NA | NA | NA | NA | 1212 | 1185 | 871 | 1488 | 4551 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 10 | NA | NA | NA | NA | 910 | 892 | 674 | 1124 | 4093 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 11 | NA | NA | NA | NA | 1123 | 1112 | 832 | 1297 | 4969 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 12 | NA | NA | NA | NA | 1366 | 1384 | 1041 | 1594 | 5536 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 13 | NA | NA | NA | NA | 1994 | 1709 | 1430 | 2269 | 6140 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 1.0R Array Set 14 | NA | NA | NA | NA | 633 | 527 | 335 | 561 | 1437 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 01 | NA | NA | NA | NA | 2281 | 2234 | 1687 | 3168 | 9845 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 02 | NA | NA | NA | NA | 2507 | 2426 | 1908 | 3053 | 9549 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 03 | NA | NA | NA | NA | 2232 | 1997 | 1468 | 2384 | 7463 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 04 | NA | NA | NA | NA | 1719 | 1753 | 1274 | 2013 | 6972 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 05 | NA | NA | NA | NA | 1957 | 2006 | 1451 | 2228 | 7320 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 06 | NA | NA | NA | NA | 2310 | 2206 | 1661 | 2602 | 8564 | NA | NA | NA | NA |
Pan troglodytes | Human Tiling 2.0R Array Set 07 | NA | NA | NA | NA | 2250 | 2176 | 1606 | 2763 | 8805 | NA | NA | NA | NA |
Rattus norvegicus | Rn230 | 23331 | 9405 | 14279 | 18641 | 18670 | 11498 | 10034 | 13439 | 14339 | NA | NA | NA | NA |
Rattus norvegicus | Rn230A | 12982 | 7102 | 10490 | 10873 | 13167 | 8619 | 7543 | 10067 | 10248 | NA | NA | NA | NA |
Rattus norvegicus | Rn230B | 12162 | 3143 | 6852 | 9068 | 7549 | 3923 | 3226 | 4229 | 4470 | NA | NA | NA | NA |
Rattus norvegicus | Rn34A | 5050 | 3994 | 5205 | 4676 | 5744 | 4224 | 3935 | 5718 | 7469 | NA | NA | NA | NA |
Rattus norvegicus | RnEx10stv1 | NA | NA | NA | 31406 | 36595 | 21280 | 21901 | 31601 | 192279 | NA | NA | NA | NA |
Table 3. Affy vs Custom
Cdf | Species | Chip | Affy Only | Custom Only | Shared | Percentage of identical probesets in shared targets | Percentage of probesets with difference<=25% in shared targets | Percentage of probesets with difference>50% in all targets |
ENSG | Bos taurus | Bovine | 1198 | 3431 | 4062 | 20 | 71.2 | 56.7 |
ENSG | Canis familiaris | CfCanine2 | 1086 | 978 | 15526 | 18.2 | 78.5 | 15.5 |
ENSG | Drosophila melanogaster | DmDrosophila2 | 287 | 64 | 13349 | 66.7 | 99.1 | 2.7 |
ENSG | Drosophila melanogaster | DmGenome1 | 174 | 108 | 11995 | 92.5 | 99.1 | 2.5 |
ENSG | Danio rerio | DrZebrafish | 1542 | 2155 | 3916 | 18.1 | 81.9 | 50.8 |
ENSG | Gallus gallus | GgChicken | 1184 | 1010 | 10988 | 20.7 | 77.8 | 20.1 |
ENSG | Homo sapiens | Hs133A | 678 | 528 | 11306 | 42.1 | 91.2 | 11.4 |
ENSG | Homo sapiens | Hs133Av2 | 678 | 528 | 11306 | 42.1 | 91.2 | 11.4 |
ENSG | Homo sapiens | Hs133B | 525 | 384 | 5906 | 50.6 | 91.2 | 14.6 |
ENSG | Homo sapiens | Hs133P | 970 | 863 | 16352 | 39 | 90.4 | 11.8 |
ENSG | Homo sapiens | Hs133X | 1112 | 790 | 16241 | 49.7 | 90.6 | 12.2 |
ENSG | Homo sapiens | Hs95Av2 | 528 | 296 | 7769 | 48.3 | 91 | 11.5 |
ENSG | Homo sapiens | HsFocus | 430 | 342 | 7334 | 50.2 | 93.5 | 10.6 |
ENSG | Mus musculus | Mm11KsubA | 322 | 179 | 3815 | 39.6 | 88 | 14.8 |
ENSG | Mus musculus | Mm11KsubB | 446 | 148 | 2617 | 19.8 | 75.2 | 25.4 |
ENSG | Mus musculus | Mm430 | 866 | 908 | 14860 | 40.6 | 89.4 | 12.3 |
ENSG | Mus musculus | Mm430A | 716 | 554 | 11169 | 41.4 | 90.7 | 11.9 |
ENSG | Mus musculus | Mouse Genome 430A 2.0 | 716 | 554 | 11169 | 41.4 | 90.7 | 11.9 |
ENSG | Mus musculus | Mm430B | 547 | 453 | 4947 | 51.6 | 90.1 | 18.3 |
ENSG | Mus musculus | Mm74Av1 | 679 | 391 | 6285 | 43.1 | 88.2 | 17.2 |
ENSG | Mus musculus | Mm74Av2 | 748 | 410 | 6964 | 38.3 | 80.8 | 18 |
ENSG | Mus musculus | Mm74Bv2 | 527 | 260 | 5035 | 44.9 | 86.5 | 16.6 |
ENSG | Mus musculus | Mm74Cv2 | 1241 | 176 | 2278 | 37.3 | 70.3 | 44.7 |
ENSG | Rattus norvegicus | Rn230 | 753 | 1382 | 8652 | 35.3 | 86.4 | 22.1 |
ENSG | Rattus norvegicus | Rn230A | 507 | 948 | 6595 | 40.3 | 90.3 | 19.7 |
ENSG | Rattus norvegicus | Rn230B | 473 | 556 | 2670 | 34.2 | 83.3 | 30.5 |
ENSG | Rattus norvegicus | Rn34A | 346 | 287 | 3648 | 22.7 | 83 | 18.2 |
ENTREZG | Bos taurus | Bovine | 2737 | 1157 | 8271 | 30.3 | 73.1 | 37.1 |
ENTREZG | Canis familiaris | CfCanine2 | 1426 | 190 | 15581 | 17.7 | 74.3 | 14.1 |
ENTREZG | Danio rerio | DrZebrafish | 5367 | 2165 | 4778 | 16.9 | 75.9 | 64.7 |
ENTREZG | Gallus gallus | GgChicken | 1612 | 1792 | 10703 | 19.4 | 66.5 | 30.3 |
ENTREZG | Homo sapiens | Hs133A | 1707 | 244 | 11717 | 37.8 | 82.3 | 17.6 |
ENTREZG | Homo sapiens | Hs133Av2 | 1707 | 244 | 11717 | 37.8 | 82.3 | 17.6 |
ENTREZG | Homo sapiens | Hs133B | 4812 | 211 | 5868 | 35 | 65.5 | 51.5 |
ENTREZG | Homo sapiens | Hs133P | 3797 | 417 | 17110 | 25.2 | 60.7 | 29.7 |
ENTREZG | Homo sapiens | Hs133X | 4091 | 449 | 16937 | 32.6 | 62.5 | 30.6 |
ENTREZG | Homo sapiens | Hs95Av2 | 1175 | 171 | 7964 | 44.8 | 83.8 | 18 |
ENTREZG | Homo sapiens | HsFocus | 825 | 132 | 7683 | 49.7 | 92.3 | 12.3 |
ENTREZG | Mus musculus | Mm11KsubA | 1245 | 126 | 4129 | 38.8 | 84.6 | 29.2 |
ENTREZG | Mus musculus | Mm11KsubB | 858 | 122 | 2711 | 20.1 | 71.9 | 34.2 |
ENTREZG | Mus musculus | Mm430 | 5957 | 444 | 16031 | 29.9 | 67.3 | 34.9 |
ENTREZG | Mus musculus | Mm430A | 1941 | 269 | 11906 | 38.3 | 82.6 | 18.7 |
ENTREZG | Mus musculus | Mouse Genome 430A 2.0 | 1941 | 269 | 11906 | 38.3 | 82.6 | 18.7 |
ENTREZG | Mus musculus | Mm430B | 7115 | 269 | 5447 | 37.4 | 66.6 | 61.7 |
ENTREZG | Mus musculus | Mm74Av1 | 2331 | 214 | 6790 | 39.2 | 77.2 | 31.9 |
ENTREZG | Mus musculus | Mm74Av2 | 1775 | 229 | 7508 | 37.5 | 75.4 | 26.1 |
ENTREZG | Mus musculus | Mm74Bv2 | 2738 | 206 | 5439 | 39.5 | 74.3 | 40.3 |
ENTREZG | Mus musculus | Mm74Cv2 | 4252 | 161 | 2560 | 31.5 | 58 | 69.4 |
ENTREZG | Rattus norvegicus | Rn230 | 3369 | 573 | 10925 | 28.9 | 66.9 | 33.4 |
ENTREZG | Rattus norvegicus | Rn230A | 2315 | 430 | 8189 | 38.1 | 80.9 | 28.2 |
ENTREZG | Rattus norvegicus | Rn230B | 3238 | 308 | 3615 | 33 | 69.7 | 54.2 |
ENTREZG | Rattus norvegicus | Rn34A | 1155 | 156 | 4068 | 22.4 | 77.6 | 29.4 |
REFSEQ | Arabidopsis thaliana | AtGenome | 1373 | 2977 | 5963 | 75.3 | 96.9 | 42.5 |
REFSEQ | Arabidopsis thaliana | AtH1 | 3863 | 7433 | 17821 | 90.6 | 98.8 | 38.9 |
REFSEQ | Bos taurus | Bovine | 3006 | 3922 | 7367 | 50 | 76.7 | 51.3 |
REFSEQ | Canis familiaris | CfCanine2 | 16483 | 256 | 519 | 56.8 | 72.8 | 97.1 |
REFSEQ | Drosophila melanogaster | DmDrosophila2 | 3346 | 8991 | 10302 | 95.6 | 98.6 | 54.6 |
REFSEQ | Drosophila melanogaster | DmGenome1 | 3107 | 8481 | 9101 | 93.4 | 98.7 | 56.1 |
REFSEQ | Danio rerio | DrZebrafish | 3369 | 6381 | 5206 | 42.8 | 83.3 | 67.1 |
REFSEQ | Gallus gallus | GgChicken | 8703 | 348 | 3606 | 52 | 74.2 | 72.4 |
REFSEQ | Homo sapiens | Hs133A | 4797 | 9048 | 8483 | 55.9 | 84.8 | 63.1 |
REFSEQ | Homo sapiens | Hs133Av2 | 4797 | 9048 | 8483 | 55.9 | 84.8 | 63.1 |
REFSEQ | Homo sapiens | Hs133B | 6082 | 4319 | 4410 | 44.8 | 68.1 | 72.6 |
REFSEQ | Homo sapiens | Hs133P | 7893 | 12414 | 12590 | 37.4 | 63.9 | 65.4 |
REFSEQ | Homo sapiens | Hs133X | 8161 | 12307 | 12448 | 41.3 | 65.4 | 66 |
REFSEQ | Homo sapiens | Hs95Av2 | 3412 | 6595 | 5665 | 58 | 86.1 | 65 |
REFSEQ | Homo sapiens | HsFocus | 2991 | 6027 | 5503 | 67.7 | 93.3 | 62.6 |
REFSEQ | Mus musculus | Mm11KsubA | 1958 | 2448 | 3227 | 52.6 | 85.9 | 60 |
REFSEQ | Mus musculus | Mm11KsubB | 1394 | 1615 | 2150 | 40.8 | 76.4 | 61.9 |
REFSEQ | Mus musculus | Mm430 | 8790 | 9851 | 11710 | 44.8 | 69.7 | 64 |
REFSEQ | Mus musculus | Mm430A | 4262 | 6228 | 9306 | 59.2 | 84.7 | 54.2 |
REFSEQ | Mus musculus | Mouse Genome 430A 2.0 | 4262 | 6228 | 9306 | 59.2 | 84.7 | 54.2 |
REFSEQ | Mus musculus | Mm430B | 8055 | 4647 | 3270 | 46.3 | 68.4 | 81.2 |
REFSEQ | Mus musculus | Mm74Av1 | 3555 | 3694 | 5332 | 54.5 | 79.4 | 59.9 |
REFSEQ | Mus musculus | Mm74Av2 | 3164 | 4086 | 5895 | 51.6 | 77.5 | 57.6 |
REFSEQ | Mus musculus | Mm74Bv2 | 4052 | 3467 | 3766 | 47.1 | 75.4 | 68.9 |
REFSEQ | Mus musculus | Mm74Cv2 | 4743 | 2090 | 1648 | 32.8 | 58.7 | 83.7 |
REFSEQ | Oryza sativa | OsRice | 406 | 22082 | 1933 | NA | 4.3 | 99 |
REFSEQ | Rattus norvegicus | Rn230 | 7425 | 11816 | 6854 | 47.2 | 70 | 75.7 |
REFSEQ | Rattus norvegicus | Rn230A | 4803 | 7480 | 5687 | 59.5 | 82.6 | 69.4 |
REFSEQ | Rattus norvegicus | Rn230B | 5376 | 6073 | 1476 | 44.2 | 72.8 | 89.6 |
REFSEQ | Rattus norvegicus | Rn34A | 1820 | 2359 | 3385 | 53.5 | 81.8 | 57.7 |
UG | Bos taurus | Bovine | 5069 | 683 | 11237 | 52.3 | 86.5 | 35.7 |
UG | Canis familiaris | CfCanine2 | 6872 | 4299 | 8670 | 34.2 | 70.1 | 58.1 |
UG | Danio rerio | DrZebrafish | 4878 | 1341 | 7581 | 34.2 | 83 | 47.9 |
UG | Gallus gallus | GgChicken | 6677 | 6400 | 10472 | 35 | 74 | 58.2 |
UG | Homo sapiens | Hs133A | 2212 | 954 | 10891 | 42.6 | 81.2 | 26.2 |
UG | Homo sapiens | Hs133Av2 | 2192 | 995 | 10850 | 42.6 | 81.3 | 26.4 |
UG | Homo sapiens | Hs133B | 6303 | 1929 | 8914 | 51.6 | 82.6 | 50.4 |
UG | Homo sapiens | Hs133P | 10153 | 2751 | 19431 | 41.7 | 78.1 | 43.4 |
UG | Homo sapiens | Hs133X | 10389 | 2718 | 19086 | 45 | 77.7 | 44.3 |
UG | Homo sapiens | Hs95Av2 | 1264 | 1560 | 6599 | 45.1 | 80.1 | 34.7 |
UG | Homo sapiens | HsFocus | 1138 | 554 | 6930 | 52.8 | 89.9 | 21.6 |
UG | Mus musculus | Mm11KsubA | 518 | 2735 | 1631 | 41.1 | 80.6 | 69.3 |
UG | Mus musculus | Mm11KsubB | 560 | 796 | 1972 | 29.7 | 75.2 | 46.4 |
UG | Mus musculus | Mm430 | 5863 | 1709 | 17735 | 47.1 | 81 | 33.3 |
UG | Mus musculus | Mm430A | 1819 | 794 | 11576 | 49.9 | 83.8 | 21.6 |
UG | Mus musculus | Mouse Genome 430A 2.0 | 1819 | 794 | 11576 | 49.9 | 83.8 | 21.6 |
UG | Mus musculus | Mm430B | 5039 | 1306 | 8021 | 54.3 | 84.4 | 46.1 |
UG | Mus musculus | Mm74Av1 | 2233 | 1352 | 5966 | 48.5 | 79.6 | 41.9 |
UG | Mus musculus | Mm74Av2 | 1606 | 1194 | 6592 | 47.8 | 81.6 | 34.2 |
UG | Mus musculus | Mm74Bv2 | 2477 | 777 | 6224 | 46.2 | 82 | 38 |
UG | Mus musculus | Mm74Cv2 | 2989 | 651 | 3851 | 41.7 | 75.9 | 53.1 |
UG | Rattus norvegicus | Rn230 | 5993 | 1303 | 17338 | 57.5 | 88.2 | 31.3 |
UG | Rattus norvegicus | Rn230A | 2868 | 759 | 10114 | 61 | 89 | 27.9 |
UG | Rattus norvegicus | Rn230B | 3760 | 666 | 8402 | 58.6 | 90.2 | 35.9 |
UG | Rattus norvegicus | Rn34A | 1050 | 676 | 4000 | 43.9 | 79.1 | 34.8 |
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