Welcome to PASS (Presorted Alignment for Short Sequences)

 

We are developing PASS actively. Please email to daimh at umich.edu if you have any questions/suggestions.


Download PASS 0.8.4 binary executable
For Linux x86-64 platform

VersionDateDescription
0.8.4Apr 29, 2009a minor update on --help
0.8.3Mar 27, 2009fixed a bug that is introduced since version 0.7.6
0.8.2Mar 23, 2009minor updates
0.8.1Mar 13, 2009minor update, report sequences that are converted to 'N'
0.8.0Feb 27, 2009Support different quality score base. So both normal fastq file and solexa fastq file are supported.
0.7.6Feb 2, 2009A lot of improvements, as well as AQUESA integration. New features are Indel match, quality score, best match only, etc.
0.7.5Nov 26, 2008 
0.7.4Nov 24, 2008 
0.7.3Nov 23, 2008 
0.7.2Nov 23, 2008 
0.7.1Nov 13, 2008 
0.7.0Oct 30, 2008 
0.6.2Oct 22, 2008 
0.6.1Oct 17, 2008 
0.6.0Oct 15, 2008 
0.5.2Oct 13, 2008 
0.5.1Oct 10, 2008 
0.5.0Oct 8, 2008 
0.4.4Sep 25, 2008 
0.4.3Sep 18, 2008 
0.4.2Sep 17, 2008 
0.4.1Sep 7, 2008 
0.4.0Sep 7, 2008 
0.3.8June 28, 2008a modification for small performance gain and a fix of a bug that happens under very rare condition
0.3.7May 22, 2008speed up alignment result outputting
0.3.6May 12, 2008IO buffer usage is optimized for running on Cluster
0.3.5May 10, 2008