Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Arabidopsis_thaliana | AG | 131822 | AG_At_REFSEQ | 88.2 | 15348 | 88.8 | 9246 | 99.78 | 99.10 | 60.15 | 99.85 | 54.22 | 90.01 | C P | C P | O |
Arabidopsis_thaliana | AGRONOMICS1 | 6046951 | AGRONOMICS1_At_REFSEQ | 17.9 | 57284 | 17.9 | 33475 | 99.35 | 99.32 | 58.32 | 99.80 | 45.71 | 78.22 | C P | C P | O |
Arabidopsis_thaliana | ATH1121501 | 251078 | ATH1121501_At_REFSEQ | 89.2 | 42193 | 89.2 | 25951 | 99.64 | 99.69 | 61.48 | 99.97 | 59.70 | 97.06 | C P | C P | O |
Bos_taurus | Bovine | 265627 | Bovine_Bt_REFSEQ | 49.3 | 14291 | 50.3 | 14504 | 99.92 | 97.90 | 94.78 | 93.39 | 84.33 | 83.09 | C P A | C P A | O |
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_REFSEQ | 86.8 | 20771 | 87.1 | 20806 | 100.00 | 99.55 | 99.97 | 99.80 | 96.73 | 96.57 | C P A | C P A | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_REFSEQ | 3.4 | 1087 | 3.0 | 974 | 87.29 | 98.64 | 88.96 | 99.28 | 79.67 | 88.91 | C P A | C P A | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_REFSEQ | 3.3 | 1087 | C P A | C P A | O | ||||||||
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_REFSEQ | 53.6 | 8833 | 56.2 | 9562 | 95.97 | 91.59 | 95.25 | 87.98 | 79.97 | 73.88 | C P A | C P A | O |
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_REFSEQ | 92.7 | 19763 | 92.8 | 19134 | 99.93 | 99.76 | 96.65 | 99.83 | 94.93 | 98.05 | C P A | C P A | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_REFSEQ | 74.7 | 21364 | 74.7 | 20666 | 99.68 | 99.69 | 96.51 | 99.77 | 94.65 | 97.84 | C P A | C P A | O |
Gallus_gallus | Chicken | 424097 | Chicken_Gg_REFSEQ | 16.5 | 4645 | 15.2 | 4292 | 91.01 | 99.09 | 91.65 | 99.18 | 89.54 | 96.90 | C P A | C P A | O |
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_REFSEQ | 77.7 | 2522 | 79.5 | 2376 | 99.88 | 97.63 | 92.74 | 98.44 | 79.22 | 84.09 | C P A | C P A | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_REFSEQ | 84.0 | 14625 | 85.8 | 13776 | 99.69 | 97.50 | 92.03 | 97.70 | 80.21 | 85.16 | C P A | C P A | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_REFSEQ | 73.3 | 22436 | 74.6 | 20953 | 99.01 | 97.29 | 90.84 | 97.27 | 75.97 | 81.35 | C P A | C P A | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_REFSEQ | 73.3 | 22436 | 74.6 | 20953 | 99.01 | 97.29 | 90.84 | 97.27 | 75.97 | 81.35 | C P A | C P A | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_REFSEQ | 43.8 | 14533 | 41.1 | 11806 | 90.72 | 96.79 | 74.82 | 92.10 | 64.82 | 79.79 | C P A | C P A | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_REFSEQ | 54.1 | 35200 | 53.0 | 30865 | 94.83 | 96.86 | 82.14 | 93.68 | 67.89 | 77.42 | C P A | C P A | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_REFSEQ | 82.4 | 32786 | 83.3 | 30872 | 99.27 | 98.17 | 91.24 | 96.90 | 76.44 | 81.18 | C P A | C P A | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_REFSEQ | 76.0 | 15810 | 77.4 | 14817 | 99.19 | 97.43 | 91.27 | 97.39 | 75.65 | 80.72 | C P A | C P A | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_REFSEQ | 76.0 | 15815 | 77.4 | 14822 | 99.19 | 97.43 | 91.27 | 97.39 | 75.64 | 80.71 | C P A | C P A | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_REFSEQ | 51.3 | 10071 | 49.2 | 8717 | 93.61 | 97.52 | 82.44 | 95.25 | 70.52 | 81.47 | C P A | C P A | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_REFSEQ | 35.2 | 7422 | 33.9 | 6299 | 92.59 | 96.21 | 78.71 | 92.74 | 66.50 | 78.36 | C P A | C P A | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_REFSEQ | 18.7 | 4557 | 17.2 | 3814 | 87.11 | 94.76 | 74.87 | 89.46 | 66.45 | 79.39 | C P A | C P A | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_REFSEQ | 35.7 | 7555 | 33.6 | 6265 | 90.53 | 96.38 | 75.66 | 91.24 | 66.42 | 80.10 | C P A | C P A | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_REFSEQ | 73.3 | 22436 | 74.6 | 20953 | 99.01 | 97.29 | 90.84 | 97.27 | 75.97 | 81.35 | C P A | C P A | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_REFSEQ | 43.8 | 14533 | 41.0 | 11806 | 90.72 | 96.79 | 74.82 | 92.10 | 64.82 | 79.79 | C P A | C P A | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_REFSEQ | 55.1 | 34980 | 54.1 | 30701 | 95.23 | 96.97 | 82.25 | 93.71 | 68.87 | 78.47 | C P A | C P A | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_REFSEQ | 76.0 | 9964 | 77.9 | 9361 | 99.66 | 97.23 | 91.23 | 97.11 | 73.64 | 78.38 | C P A | C P A | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_REFSEQ | 22.5 | 42667 | 22.7 | 40667 | 96.59 | 96.00 | 75.86 | 79.59 | 54.48 | 57.15 | C P A | C P A | O |
Homo_sapiens | HuGene10stv1 | 788904 | HuGene10stv1_Hs_REFSEQ | 70.5 | 34248 | 71.5 | 33027 | 98.87 | 97.49 | 90.04 | 93.37 | 72.71 | 75.40 | C P A | C P A | O |
Homo_sapiens | HuGene11stv1 | 803478 | HuGene11stv1_Hs_REFSEQ | 69.1 | 34243 | 70.1 | 33012 | 98.87 | 97.49 | 90.04 | 93.39 | 72.71 | 75.42 | C P A | C P A | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_REFSEQ | 0.3 | 216 | 0.3 | 176 | 79.97 | 91.90 | 75.46 | 92.61 | 75.46 | 92.61 | C P A | C P A | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_REFSEQ | 0.4 | 4464 | 0.4 | 4092 | 88.63 | 93.06 | 80.24 | 87.54 | 78.09 | 85.19 | C P A | C P A | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_REFSEQ | 0.5 | 5410 | 0.5 | 5051 | 89.39 | 91.40 | 80.52 | 86.24 | 78.84 | 84.44 | C P A | C P A | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_REFSEQ | 0.5 | 1605 | 0.5 | 1507 | 90.95 | 93.36 | 82.43 | 87.79 | 79.81 | 85.00 | C P A | C P A | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_REFSEQ | 0.4 | 1296 | 0.4 | 1145 | 87.81 | 90.88 | 77.85 | 88.12 | 75.85 | 85.85 | C P A | C P A | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_REFSEQ | 73.5 | 29166 | 74.4 | 27728 | 98.24 | 97.12 | 90.20 | 94.88 | 78.93 | 83.02 | C P A | C P A | O |
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_REFSEQ | 51.9 | 34867 | 50.9 | 30584 | 94.73 | 96.69 | 82.21 | 93.72 | 68.16 | 77.70 | C P A | C P A | O |
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_REFSEQ | 30.9 | 8527 | 31.6 | 8488 | 98.54 | 96.35 | 90.38 | 90.80 | 79.89 | 80.25 | C P A | C P A | O |
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_REFSEQ | 4.2 | 1792 | 1.2 | 556 | 26.95 | 98.44 | 30.64 | 98.74 | 26.17 | 84.35 | C P | C P | O |
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_REFSEQ | 75.2 | 16899 | 76.6 | 17728 | 99.40 | 97.57 | 96.08 | 91.59 | 82.86 | 78.98 | C P A | C P A | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_REFSEQ | 37.8 | 9551 | 36.5 | 9065 | 92.27 | 95.68 | 82.67 | 87.10 | 75.52 | 79.57 | C P A | C P A | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_REFSEQ | 55.8 | 23886 | 55.8 | 24142 | 97.02 | 96.98 | 90.74 | 89.78 | 78.61 | 77.78 | C P A | C P A | O |
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_REFSEQ | 65.7 | 10773 | 67.4 | 11565 | 99.55 | 97.05 | 96.23 | 89.64 | 81.34 | 75.77 | C P A | C P A | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_REFSEQ | 58.7 | 8725 | 58.6 | 8693 | 97.15 | 97.32 | 91.76 | 92.10 | 81.00 | 81.30 | C P A | C P A | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_REFSEQ | 25.9 | 4636 | 25.4 | 4680 | 94.24 | 95.94 | 87.83 | 87.01 | 81.73 | 80.96 | C P A | C P A | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_REFSEQ | 75.3 | 16899 | 76.7 | 17728 | 99.40 | 97.57 | 96.08 | 91.59 | 82.86 | 78.98 | C P A | C P A | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_REFSEQ | 37.9 | 9551 | 36.5 | 9065 | 92.27 | 95.68 | 82.67 | 87.10 | 75.52 | 79.57 | C P A | C P A | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_REFSEQ | 22.8 | 32025 | 23.5 | 38073 | 97.03 | 94.19 | 83.57 | 70.29 | 65.44 | 55.05 | C P A | C P A | O |
Mus_musculus | MoGene10stv1 | 819132 | MoGene10stv1_Mm_REFSEQ | 73.9 | 28451 | 75.5 | 31672 | 97.39 | 95.27 | 91.80 | 82.46 | 72.10 | 64.77 | C P A | C P A | O |
Mus_musculus | MoGene11stv1 | 828268 | MoGene11stv1_Mm_REFSEQ | 72.8 | 28451 | 74.5 | 31672 | 97.38 | 95.26 | 91.80 | 82.46 | 72.10 | 64.77 | C P A | C P A | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_REFSEQ | 56.7 | 23886 | 56.8 | 24142 | 97.02 | 96.98 | 90.74 | 89.78 | 78.61 | 77.78 | C P A | C P A | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_REFSEQ | 75.3 | 16899 | 76.7 | 17728 | 99.40 | 97.57 | 96.08 | 91.59 | 82.86 | 78.98 | C P A | C P A | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_REFSEQ | 65.0 | 6009 | 66.8 | 6543 | 99.49 | 96.86 | 95.62 | 87.82 | 77.02 | 70.73 | C P A | C P A | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_REFSEQ | 52.6 | 4013 | 53.9 | 4308 | 99.61 | 97.26 | 95.37 | 88.83 | 78.05 | 72.70 | C P A | C P A | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_REFSEQ | 67.4 | 21336 | 68.0 | 22349 | 97.27 | 96.40 | 92.50 | 88.30 | 82.52 | 78.78 | C P A | C P A | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_REFSEQ | 49.2 | 22174 | 48.9 | 22429 | 96.07 | 96.64 | 91.12 | 90.09 | 83.46 | 82.51 | C P A | C P A | O |
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_REFSEQ | 45.5 | 15236 | 46.5 | 15443 | 99.56 | 97.39 | 97.72 | 96.41 | 87.52 | 86.34 | C P A | C P A | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_REFSEQ | 56.9 | 14717 | 58.2 | 14914 | 99.62 | 97.51 | 97.74 | 96.45 | 87.48 | 86.33 | C P A | C P A | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_REFSEQ | 60.9 | 10973 | 62.2 | 11116 | 99.65 | 97.62 | 98.09 | 96.82 | 87.61 | 86.48 | C P A | C P A | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_REFSEQ | 31.7 | 5663 | 32.5 | 5763 | 99.38 | 96.89 | 96.79 | 95.11 | 89.07 | 87.52 | C P A | C P A | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_REFSEQ | 63.7 | 5248 | 64.9 | 5325 | 99.65 | 97.80 | 98.49 | 97.07 | 83.54 | 82.33 | C P A | C P A | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_REFSEQ | 37.4 | 4045 | 38.3 | 4109 | 99.53 | 97.11 | 97.43 | 95.91 | 86.16 | 84.81 | C P A | C P A | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_REFSEQ | 41.1 | 4454 | 42.0 | 4507 | 99.44 | 97.14 | 97.44 | 96.29 | 84.44 | 83.45 | C P A | C P A | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_REFSEQ | 75.9 | 836 | 76.3 | 842 | 99.51 | 98.98 | 98.92 | 98.22 | 90.19 | 89.55 | C P A | C P A | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_REFSEQ | 66.2 | 656 | 68.2 | 664 | 99.68 | 96.78 | 97.71 | 96.54 | 73.02 | 72.14 | C P A | C P A | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_REFSEQ | 22.3 | 27571 | 22.9 | 28541 | 99.65 | 97.13 | 97.66 | 94.34 | 76.81 | 74.20 | C P A | C P A | O |
Rattus_norvegicus | RaGene10stv1 | 777760 | RaGene10stv1_Rn_REFSEQ | 69.5 | 25521 | 71.7 | 26420 | 99.79 | 96.71 | 97.54 | 94.22 | 76.98 | 74.36 | C P A | C P A | O |
Rattus_norvegicus | RaGene11stv1 | 788189 | RaGene11stv1_Rn_REFSEQ | 68.5 | 25519 | 70.7 | 26418 | 99.79 | 96.71 | 97.54 | 94.22 | 76.97 | 74.35 | C P A | C P A | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_REFSEQ | 46.7 | 15236 | 47.7 | 15443 | 99.56 | 97.39 | 97.72 | 96.41 | 87.52 | 86.34 | C P A | C P A | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_REFSEQ | 59.5 | 1562 | 60.5 | 1578 | 99.55 | 97.88 | 98.66 | 97.66 | 90.20 | 89.29 | C P A | C P A | O |
Xenopus_tropicalis | Xtropicalis | 648548 | Xtropicalis_Xt_REFSEQ | 40.7 | 19496 | 17.3 | 8012 | 42.40 | 99.77 | 40.81 | 99.31 | 40.46 | 98.45 | C P | C P | O |