Home > Service > Custom CDF > Custom CDF Download
     
Download Custom CDF  

Versions

1    2    3    4    5    6    7    8    9    10    11    12    13    14    15    16    17    18   

Database builds used to generate custom CDF. And clicking the link "Version #" would lead to download page for the version


Version 1    Download    Statistics

  UniGene Genome ENSEMBL RefSeq
Human 170 34.1 23.1 7
Mouse 136 32 23.1 7
Rat 131 3.1 23.1 7

 

Version 2    Download    Statistics

  UniGene Genome ENSEMBL Entrez Gene RefSeq DoTS dbSNP
Human 175 35.1 25.1 35.1 7 9 122
Mouse 141 33.1 25.1 33 7 9 122
Rat 135 3.1 25.1 2 7 n/a 122

 

Version 3    Download    Statistics

  UniGene Genome ENSEMBL Entrez Gene RefSeq DoTS dbSNP
Human 176 35.1 27 35.1 8 9 123
Mouse 142 33.1 27 33 8 9 123
Rat 137 3.1 27 2 8 n/a 123

Version 4    Download    Statistics

  UniGene Genome ENSEMBL Entrez Gene RefSeq DoTS dbSNP
Human 180 35.1 27 35.1 9 9 124
Mouse 144 33.1 27 33 9 9 124
Rat 139 3.1 27 2 9 n/a 124

Version 5    Download    Statistics

  UniGene Genome ENSEMBL Entrez Gene RefSeq DoTS dbSNP
Human 183 35.1 30 35.1 9 9 124
Mouse 146 33.1 30 33 9 10 124
Rat 142 3.4 30 3.1 9 n/a 124

Version 6    Download    Statistics

  UniGene Genome ENSEMBL Entrez Gene RefSeq DoTS dbSNP
Human 186 35.1 32 35.1 12 9 124
Mouse 148 34 32 34 12 10 124
Rat 144 3.4 32 3.4 12 n/a 124

Version 7    Download    Statistics

Species UniGene Genome ENSEMBL Entrez Gene RefSeq TIGR dbSNP
Arabidopsis 51 N/A N/A N/A 15 1-Dec N/A
Dog 13 BROADD1.feb 37 NCBI2.1 15 N/A 125
Drosophila 41 BDGP4.feb 37 N/A 15 N/A N/A
Zebrafish 90 ZFISH5.feb 37 NCBI1.1 15 N/A 125
Chicken 29 WASHUC1.feb 37 N/A 15 N/A 125
Human 189 NCBI35.feb 37 NCBI36.1 15 N/A 125
Mouse 152 NCBIM34.mar 37 NCBI35.1 15 N/A 125
Rice 59 N/A N/A N/A 15 16 125
Chimpanzee N/A CHIMP1A.mar 37 N/A N/A N/A N/A
Rat 151 RGSC3.4.mar 37 NCBI3.1 15 N/A 125
Grape 17 N/A N/A N/A N/A 4 N/A

Version 8    Download    Statistics

Species ENSEMBL ENTREZG Genome REFSEQ TAIR TIGR UniGene dbSNP
Arabidopsis thaliana NA NA 8/10/2006 17 8/10/2006 12/1/2005 53 NA
Canis familiaris 39 9/6/2005 BROADD1.apr 17 NA NA 15 125
Drosophila melanogaster 39 NA BDGP4.2.apr 17 NA NA 44 NA
Danio rerio 39 7/14/2005 ZFISH6.jun 17 NA NA 91 125
Gallus gallus 39 NA WASHUC1.jun 17 NA NA 30 125
Homo sapiens 39 3/3/2006 NCBI36.jun 17 NA NA 192 126
Mus musculus 39 5/4/2006 NCBIM36.jun 17 NA NA 155 126
Oryza sativa NA NA NA 17 NA 16 61 125
Pan troglodytes 39 5/25/2005 CHIMP1A.jun NA NA NA NA NA
Rattus norvegicus 39 7/15/2005 RGSC3.4.jun 17 NA NA 154 125
Vitis vinifera NA NA NA NA NA 4 18 NA

Version 9    Download    Statistics

SpeciesAffy AnnotationENSEMBLENTREZGGenomeGenome for ENTREZGREFSEQTAIRUGdbSNP
Arabidopsis thalianana22, 03/09/2007NANA1con.01222004, file date is 08/10/2006NANCBI, Jan 11, 20079/07/200656NA
Bos taurusna22, 03/09/20074212/08/2006Btau_2.0.42Build 3, Version 1, 01/03/200722NA82NA
Canis familiarisna22, 03/09/20074209/06/2005BROADD2.42Build 2, Version 1, 09/08/2005UCSC, Feb 17, 2007NA17126
Drosophila melanogasterna22, 03/09/20074211/29/2006BDGP4.3.42NAUCSC, Feb 15, 2007NA46NA
Danio reriona22, 03/09/20074207/14/2005ZFISH6.42Build 1, Version 1, 07/05/200522NA100126
Gallus gallusna22, 03/09/20074211/29/2006WASHUC2.42Build 2, Version 1, 11/30/2006UCSC, Feb 16, 2007NA32126
Homo sapiensna22, 03/09/20074209/11/2006NCBI36.42Build 36, Version 2, 09/14/200622NA199127
Macaca mulattana22, 03/09/20074206/22/2006NABuild 1, Version 1, 06/23/2006NANA6NA
Mus musculusna22, 03/09/20074205/04/2006NCBIM36.42Build 36, Version 1, 05/08/200622NA161126
Oryza sativana22, 03/09/2007NANANANANCBI, Jan 11, 2007NA65126
Pan troglodytesNA4209/26/2006CHIMP2.1.42Build 2, Version 1, 10/04/2006NANANANA
Rattus norvegicusna22, 03/09/20074206/28/2006RGSC3.4.42Build 4, Version 1, 07/05/200622NA160126

Version 10    Download    Statistics  (Annotation packages for some customCDF libraries are at http://nugo-r.bioinformatics.nl/NuGO_R.html. Courtesy of Philip de Groot. We appreciate his help)

SpeciesAffy AnnotationENSEMBLENTREZGGenomeGenome for ENTREZGREFSEQUGdbSNP
Arabidopsis thalianana23, May 31, 2007NAJun 28, 20071con.01222004, file date is 08/10/2006NANCBI, Jul 27, 200761NA
Bos taurusna23, May 31, 200746Dec 28, 2006Btau_3.1.46Build 3, Version 1, Jan 3, 20072485NA
Canis familiarisna23, May 31, 200746Sep 6, 2005BROADD2.46Build 2, Version 1, Sep 8, 2005UCSC, Aug 30, 200719127, Jul 22, 2006
Drosophila melanogasterna23, May 31, 200746Nov 29, 2006BDGP4.3.46NAUCSC, Sep 3, 200750NA
Danio reriona23, May 31, 200746Feb 27, 2007ZFISH7.46Build 2, Version 1, Mar 1, 200724105127, Nov 1, 2005
Gallus gallusna23, May 31, 200746Nov 29, 2006WASHUC2.46Build 2, Version 1, Nov 30, 2006UCSC, Aug 30, 200734127, Jul 22, 2006
Homo sapiensna23, May 31, 200746Sep 11 2006NCBI36.46Build 36, Version 2, Sep 14, 200624204127, Apr 18, 2007
Macaca mulattana23, May 31, 200746Jun 22, 2006NABuild 1, Version 1, Jun 23, 2006NA8NA
Mus musculusna23, May 31, 200746Jun 28, 2007NCBIM36.46Build 37, Version 1, Jul 5, 200724165127, Jun 23, 2006
Oryza sativana23, May 31, 2007NANANANANCBI, Jul 27, 200768127, Oct 31, 2005
Pan troglodytesNA46Sep 26, 2006CHIMP2.1.46Build 2, Version 1, Oct 4, 2006NANANA
Rattus norvegicusna23, May 31, 200746Jun 28, 2006RGSC3.4.46Build 4, Version 1, Jul 5, 200624165127, Mar 5, 2007

Version 11 (Data Sources)

Custom CDFRelease Date 
ENTREZGNovember 12, 2008Click Me
UGNovember 12, 2008Click Me
ENSGNovember 12, 2008Click Me
VEGAGNovember 12, 2008Click Me
ENSENovember 12, 2008Click Me
VEGAENovember 12, 2008Click Me
ENSTNovember 12, 2008Click Me
VEGATNovember 12, 2008Click Me
REFSEQNovember 12, 2008 Click Me
TAIRTNovember 12, 2008 Click Me
TAIRGNovember 12, 2008 Click Me

Version 12 (Data Sources)
On Dec 2, 2009, version 12.0.0 is upgraded to 12.1.0 in order to be compatible with R 2.10 and Bioc 2.5

Custom CDFRelease Date 
ENTREZGJuly 30, 2009Click Me
UGJuly 30, 2009Click Me
ENSGJuly 30, 2009Click Me
VEGAGJuly 30, 2009Click Me
ENSEJuly 30, 2009Click Me
VEGAEJuly 30, 2009Click Me
ENSTJuly 30, 2009Click Me
VEGATJuly 30, 2009Click Me
REFSEQJuly 30, 2009Click Me
TAIRTJuly 30, 2009Click Me
TAIRGJuly 30, 2009Click Me
MIRBASEGAugust 21, 2009Click Me
MIRBASEFAugust 21, 2009Click Me

Version 13 (Data Sources)
Starting from July 6, version 13.0.0 is released

Custom CDFRelease Date 
ENTREZGJuly 6, 2010Click Me
REFSEQJuly 6, 2010Click Me
ENSGJuly 12, 2010Click Me
ENSEJuly 12, 2010Click Me
ENSTJuly 12, 2010Click Me
VEGAGJuly 12, 2010Click Me
VEGAEJuly 12, 2010Click Me
VEGATJuly 12, 2010Click Me
TAIRGJuly 12, 2010Click Me
TAIRTJuly 12, 2010Click Me
UGJuly 15, 2010Click Me
MIRBASEFAugust 10, 2010Click Me
MIRBASEGAugust 10, 2010Click Me

Version 14 (Data Sources)
Starting from March 11, 2011, version 14 is released

Custom CDFRelease DateR 2.13, BioC 2.8R 2.12, BioC 2.7
MIRBASEFMarch 8, 2011 Click Me Click Me
MIRBASEGMarch 8, 2011 Click Me Click Me
ENTREZGMar 10, 2011 Click Me Click Me
ENSTMarch 11, 2011 Click Me Click Me
REFSEQMarch 16, 2011 Click Me Click Me
VEGATMarch 17, 2011 Click Me Click Me
UGMarch 21, 2011 Click Me Click Me
TAIRTMarch 22, 2011 Click Me Click Me
TAIRGMarch 22, 2011 Click Me Click Me
JCVITMarch 24, 2011 Click Me Click Me
JCVIGMarch 24, 2011 Click Me Click Me
ENSEApril 2, 2011 Click Me Click Me
ENSGApril 2, 2011 Click Me Click Me
VEGAEApril 2, 2011 Click Me Click Me
VEGAGApril 2, 2011 Click Me Click Me

Version 15 (Data Sources)
Starting from Jan 18, 2012, version 15 is released
Dr. Philip de Groot from Wageningen University created some annotation libraries

Custom CDFRelease DateR 2.14, BioC 2.9R 2.15, BioC 2.10
ENTREZGJan 18, 2012 Click Me Click Me
MIRBASEFJan 20, 2012 Click Me Click Me
MIRBASEGJan 20, 2012 Click Me Click Me
ENSTMar 10, 2012 Click Me Click Me
ENSGMar 10 2012 Click Me Click Me
ENSEMar 10, 2012 Click Me Click Me
VEGATMar 10, 2012 Click Me Click Me
VEGAGMar 10, 2012 Click Me Click Me
VEGAEMar 10, 2012 Click Me Click Me
REFSEQMar 13, 2012 Click Me Click Me
TAIRTMar 13, 2012 Click Me Click Me
TAIRGMar 13, 2012 Click Me Click Me
JCVITMar 15, 2012 Click Me Click Me
JCVIGMar 15, 2012 Click Me Click Me
UGMar 18, 2012 Click Me Click Me
AUGUSTUSTMar 22, 2012 Click Me Click Me

Version 16 (Data Sources)
Sep 27, 2012, version 16 is released

Custom CDFR 2.15, BioC 2.11
ACEVIEWG Click Me
ACEVIEWT Click Me
AUGUSTUST Click Me
ENSE Click Me
ENSG Click Me
ENST Click Me
ENTREZG Click Me
JCVIG Click Me
JCVIT Click Me
MIRBASEF Click Me
MIRBASEG Click Me
REFSEQ Click Me
TAIRG Click Me
TAIRT Click Me
VEGAE Click Me
VEGAG Click Me
VEGAT Click Me

Version 17 (Data Sources)
Apr 25, 2013, version 17 is released

Custom CDFR 2.15, BioC 2.11R 3.0, BioC 2.12
ACEVIEWG Click Me Click Me
ACEVIEWT Click Me Click Me
AUGUSTUST Click Me Click Me
ENSE Click Me Click Me
ENSG Click Me Click Me
ENST Click Me Click Me
ENTREZG Click Me Click Me
JCVIG Click Me Click Me
JCVIT Click Me Click Me
MIRBASEF Click Me Click Me
MIRBASEG Click Me Click Me
REFSEQ Click Me Click Me
TAIRG Click Me Click Me
TAIRT Click Me Click Me
VEGAE Click Me Click Me
VEGAG Click Me Click Me
VEGAT Click Me Click Me

Version 18 (Data Sources)
Jan 23, 2014, version 18 is released. You might want download our modified affy package, if you got error message "The affy package is not designed for this array type, Please use either the oligo or xps package."
affy_1.40.0.tar.gz or affy_1.40.1.zip

Custom CDFR 3.0, BioC 2.13
ACEVIEWG Click Me
ACEVIEWT Click Me
AUGUSTUST Click Me
ENSE Click Me
ENSG Click Me
ENST Click Me
ENTREZG Click Me
JCVIG Click Me
JCVIT Click Me
MIRBASEF Click Me
MIRBASEG Click Me
REFSEQ Click Me
TAIRG Click Me
TBGENE Click Me
TAIRT Click Me
VEGAE Click Me
VEGAG Click Me
VEGAT Click Me

Comments, suggestions and problems? Discuss at our forum

 

Problem with this website? Email us at daimh@umich.edu  

 

İMicroArray Lab