Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Bos_taurus | Bovine | 265627 | Bovine_Bt_ENSE | 35.2 | 12951 | 32.3 | 12305 | 84.10 | 91.64 | 81.14 | 85.40 | 74.54 | 78.46 | C P | C P | O |
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_ENSE | 67.8 | 34229 | 67.8 | 34229 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_ENSE | 38.3 | 31561 | 38.3 | 31559 | 99.99 | 100.00 | 99.99 | 100.00 | 99.96 | 99.97 | C P | C P | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_ENSE | 37.3 | 31561 | 37.3 | 31559 | 99.99 | 100.00 | 99.99 | 100.00 | 99.96 | 99.97 | C P | C P | O |
Canis_familiaris | cangene11st | 621953 | cangene11st_Cf_ENSE | 52.9 | 62537 | C P | C P | O | ||||||||
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_ENSE | 54.4 | 17962 | 53.3 | 17555 | 97.71 | 99.66 | 95.71 | 97.93 | 87.79 | 89.83 | C P | C P | O |
Danio_rerio | zebgene10st | 1245559 | zebgene10st_Dr_ENSE | 31.6 | 86533 | C P | C P | O | ||||||||
Danio_rerio | zebgene11st | 1245558 | zebgene11st_Dr_ENSE | 31.6 | 86533 | C P | C P | O | ||||||||
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_ENSE | 90.1 | 21794 | 90.2 | 21254 | 99.69 | 99.57 | 75.51 | 77.43 | 74.50 | 76.40 | C P | C P | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_ENSE | 70.6 | 21704 | 70.3 | 21051 | 98.65 | 98.97 | 74.99 | 77.31 | 73.95 | 76.24 | C P | C P | O |
Equus_caballus | equgene10st | 537520 | equgene10st_EQca_ENSE | 53.8 | 57130 | C P | C P | O | ||||||||
Gallus_gallus | Chicken | 424097 | Chicken_Gg_ENSE | 32.1 | 23740 | 32.0 | 23687 | 99.55 | 100.00 | 99.78 | 100.00 | 98.03 | 98.25 | C P | C P | O |
Gallus_gallus | chigene10st | 464100 | chigene10st_Gg_ENSE | 55.4 | 50316 | C P | C P | O | ||||||||
Gallus_gallus | chigene11st | 464100 | chigene11st_Gg_ENSE | 55.4 | 50316 | C P | C P | O | ||||||||
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_ENSE | 70.5 | 5264 | 69.8 | 4702 | 98.53 | 99.57 | 70.00 | 78.37 | 66.15 | 74.05 | C P | C P | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_ENSE | 75.2 | 22703 | 74.3 | 20602 | 98.51 | 99.75 | 74.43 | 82.02 | 70.78 | 78.00 | C P | C P | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_ENSE | 69.2 | 43891 | 68.2 | 39646 | 98.04 | 99.44 | 73.38 | 81.24 | 69.48 | 76.92 | C P | C P | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_ENSE | 69.2 | 43889 | 68.2 | 39644 | 98.04 | 99.44 | 73.38 | 81.24 | 69.48 | 76.92 | C P | C P | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_ENSE | 46.4 | 23535 | 44.9 | 21762 | 95.01 | 98.19 | 76.46 | 82.69 | 72.90 | 78.83 | C P | C P | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_ENSE | 55.8 | 71971 | 54.4 | 65671 | 96.12 | 98.60 | 74.27 | 81.39 | 70.14 | 76.87 | C P | C P | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_ENSE | 77.7 | 86303 | 76.6 | 77528 | 97.96 | 99.36 | 70.90 | 78.92 | 68.89 | 76.68 | C P | C P | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_ENSE | 73.1 | 28995 | 72.3 | 26315 | 98.50 | 99.55 | 73.79 | 81.30 | 71.04 | 78.27 | C P | C P | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_ENSE | 73.2 | 28952 | 72.4 | 26280 | 98.50 | 99.55 | 73.83 | 81.33 | 71.06 | 78.28 | C P | C P | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_ENSE | 54.2 | 16403 | 52.7 | 14964 | 96.17 | 98.88 | 75.74 | 83.02 | 72.85 | 79.86 | C P | C P | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_ENSE | 39.8 | 12590 | 38.0 | 11405 | 94.23 | 98.59 | 73.99 | 81.67 | 71.37 | 78.78 | C P | C P | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_ENSE | 25.1 | 8224 | 23.5 | 7491 | 91.69 | 98.10 | 75.19 | 82.55 | 71.45 | 78.44 | C P | C P | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_ENSE | 38.9 | 13448 | 37.4 | 12340 | 94.53 | 98.37 | 75.10 | 81.85 | 72.12 | 78.60 | C P | C P | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_ENSE | 69.2 | 43889 | 68.2 | 39644 | 98.04 | 99.44 | 73.38 | 81.24 | 69.48 | 76.92 | C P | C P | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_ENSE | 46.4 | 23533 | 44.9 | 21760 | 95.01 | 98.19 | 76.46 | 82.69 | 72.90 | 78.84 | C P | C P | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_ENSE | 55.9 | 67865 | 54.6 | 61922 | 96.32 | 98.68 | 74.68 | 81.85 | 70.82 | 77.62 | C P | C P | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_ENSE | 72.0 | 19952 | 71.0 | 17873 | 98.29 | 99.66 | 72.77 | 81.23 | 67.51 | 75.37 | C P | C P | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_ENSE | 29.8 | 476418 | 28.9 | 442179 | 95.75 | 98.96 | 69.11 | 74.46 | 68.39 | 73.69 | C P | C P | O |
Homo_sapiens | HuGene10stv1 | 788904 | HuGene10stv1_Hs_ENSE | 63.6 | 143086 | 63.2 | 132189 | 98.60 | 99.30 | 72.96 | 78.98 | 72.11 | 78.05 | C P | C P | O |
Homo_sapiens | HuGene11stv1 | 803478 | HuGene11stv1_Hs_ENSE | 62.4 | 142992 | 61.9 | 132098 | 98.60 | 99.30 | 72.95 | 78.97 | 72.09 | 78.04 | C P | C P | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_ENSE | 1.0 | 298 | 0.5 | 278 | 50.34 | 93.79 | 78.86 | 84.53 | 11.41 | 12.23 | C P | C P | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_ENSE | 1.4 | 8653 | 0.6 | 6410 | 43.38 | 96.85 | 62.43 | 84.27 | 5.02 | 6.77 | C P | C P | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_ENSE | 1.8 | 10547 | 0.8 | 8206 | 44.27 | 96.72 | 65.02 | 83.57 | 6.53 | 8.40 | C P | C P | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_ENSE | 1.6 | 2547 | 0.8 | 2281 | 47.86 | 96.96 | 75.27 | 84.04 | 6.05 | 6.75 | C P | C P | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_ENSE | 1.2 | 1983 | 0.6 | 1769 | 47.88 | 97.27 | 75.95 | 85.13 | 6.30 | 7.07 | C P | C P | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_ENSE | 72.4 | 46764 | 71.4 | 43491 | 97.68 | 98.98 | 75.98 | 81.69 | 73.23 | 78.74 | C P | C P | O |
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_ENSE | 56.5 | 66051 | 55.2 | 60405 | 96.15 | 98.59 | 75.07 | 82.09 | 71.01 | 77.65 | C P | C P | O |
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_ENSE | 29.8 | 19679 | 29.3 | 18691 | 97.80 | 99.32 | 72.03 | 75.83 | 70.13 | 73.83 | C P | C P | O |
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_ENSE | 34.0 | 29072 | 34.0 | 29072 | 99.99 | 100.00 | 100.00 | 100.00 | 99.94 | 99.94 | C P | C P | O |
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_ENSE | 69.7 | 32238 | 69.4 | 31786 | 99.58 | 99.96 | 96.71 | 98.08 | 96.00 | 97.37 | C P | C P | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_ENSE | 41.2 | 15627 | 40.9 | 15510 | 99.32 | 99.86 | 97.44 | 98.18 | 97.16 | 97.89 | C P | C P | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_ENSE | 54.7 | 45493 | 54.5 | 44953 | 99.48 | 99.93 | 96.93 | 98.09 | 96.31 | 97.47 | C P | C P | O |
Mus_musculus | MGU74A | 201964 | MGU74A_Mm_ENSE | 54.1 | 17449 | C P | C P | O | ||||||||
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_ENSE | 62.2 | 19398 | 62.0 | 19059 | 99.57 | 99.95 | 96.23 | 97.94 | 95.07 | 96.76 | C P | C P | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_ENSE | 59.5 | 14970 | 59.3 | 14871 | 99.54 | 99.86 | 97.49 | 98.14 | 96.65 | 97.29 | C P | C P | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_ENSE | 28.4 | 6777 | 28.3 | 6740 | 99.25 | 99.82 | 97.70 | 98.23 | 96.98 | 97.51 | C P | C P | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_ENSE | 69.8 | 32238 | 69.5 | 31786 | 99.58 | 99.96 | 96.71 | 98.08 | 96.00 | 97.37 | C P | C P | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_ENSE | 41.2 | 15627 | 41.0 | 15510 | 99.32 | 99.86 | 97.44 | 98.18 | 97.16 | 97.89 | C P | C P | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_ENSE | 26.6 | 334169 | 26.4 | 330190 | 99.40 | 99.96 | 95.55 | 96.70 | 95.44 | 96.59 | C P | C P | O |
Mus_musculus | MoGene10stv1 | 819132 | MoGene10stv1_Mm_ENSE | 58.3 | 129955 | 58.1 | 128869 | 99.60 | 99.88 | 94.79 | 95.59 | 94.74 | 95.54 | C P | C P | O |
Mus_musculus | MoGene11stv1 | 828268 | MoGene11stv1_Mm_ENSE | 57.4 | 129891 | 57.3 | 128804 | 99.60 | 99.88 | 94.79 | 95.59 | 94.74 | 95.54 | C P | C P | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_ENSE | 55.7 | 45493 | 55.4 | 44953 | 99.48 | 99.93 | 96.93 | 98.09 | 96.31 | 97.47 | C P | C P | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_ENSE | 69.8 | 32238 | 69.5 | 31786 | 99.58 | 99.96 | 96.71 | 98.08 | 96.00 | 97.37 | C P | C P | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_ENSE | 63.3 | 10481 | 62.9 | 10264 | 99.38 | 99.95 | 96.15 | 98.19 | 93.38 | 95.35 | C P | C P | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_ENSE | 46.8 | 9388 | 46.5 | 9210 | 99.33 | 100.00 | 94.60 | 96.43 | 92.63 | 94.42 | C P | C P | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_ENSE | 64.1 | 33144 | 63.9 | 32836 | 99.60 | 99.92 | 97.20 | 98.11 | 96.81 | 97.72 | C P | C P | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_ENSE | 52.7 | 34875 | 52.4 | 34523 | 99.32 | 99.92 | 97.35 | 98.34 | 96.32 | 97.30 | C P | C P | O |
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_ENSE | 34.5 | 16154 | 34.3 | 16108 | 99.31 | 100.00 | 99.72 | 100.00 | 95.39 | 95.66 | C P | C P | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_ENSE | 43.8 | 15868 | 43.5 | 15822 | 99.31 | 100.00 | 99.71 | 100.00 | 95.50 | 95.78 | C P | C P | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_ENSE | 46.4 | 11369 | 46.1 | 11336 | 99.32 | 100.00 | 99.71 | 100.00 | 95.72 | 96.00 | C P | C P | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_ENSE | 23.9 | 5381 | 23.8 | 5368 | 99.29 | 100.00 | 99.76 | 100.00 | 95.15 | 95.38 | C P | C P | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_ENSE | 50.7 | 7795 | 50.3 | 7761 | 99.18 | 100.00 | 99.56 | 100.00 | 95.07 | 95.49 | C P | C P | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_ENSE | 30.7 | 3956 | 30.4 | 3953 | 99.25 | 100.00 | 99.92 | 100.00 | 94.74 | 94.81 | C P | C P | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_ENSE | 32.8 | 4530 | 32.6 | 4516 | 99.25 | 100.00 | 99.69 | 100.00 | 94.81 | 95.11 | C P | C P | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_ENSE | 63.2 | 1400 | 62.7 | 1394 | 99.32 | 100.00 | 99.57 | 100.00 | 95.50 | 95.91 | C P | C P | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_ENSE | 52.6 | 1030 | 52.2 | 1027 | 99.37 | 100.00 | 99.71 | 100.00 | 95.92 | 96.20 | C P | C P | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_ENSE | 21.2 | 189051 | 21.2 | 189048 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 99.99 | C P | C P | O |
Rattus_norvegicus | RaGene10stv1 | 777760 | RaGene10stv1_Rn_ENSE | 54.1 | 77761 | 54.1 | 77761 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 99.99 | C P | C P | O |
Rattus_norvegicus | RaGene11stv1 | 788189 | RaGene11stv1_Rn_ENSE | 53.3 | 77750 | 53.3 | 77750 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 99.99 | C P | C P | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_ENSE | 35.4 | 16154 | 35.2 | 16108 | 99.31 | 100.00 | 99.72 | 100.00 | 95.39 | 95.66 | C P | C P | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_ENSE | 45.4 | 1683 | 45.1 | 1680 | 99.39 | 100.00 | 99.82 | 100.00 | 96.43 | 96.61 | C P | C P | O |
Saccharomyces_cerevisiae | YGS98 | 138412 | YGS98_Sc_ENSE | 75.1 | 6243 | 75.3 | 6247 | 100.00 | 99.82 | 100.00 | 99.94 | 99.04 | 98.98 | C P | C P | O |
Saccharomyces_cerevisiae | Yeast2 | 120855 | Yeast2_Sc_ENSE | 51.1 | 5634 | 51.2 | 5638 | 100.00 | 99.79 | 100.00 | 99.93 | 99.36 | 99.29 | C P | C P | O |
Sus_scrofa | Porcine | 265635 | Porcine_Ss_ENSE | 16.3 | 7083 | 16.3 | 7083 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Sus_scrofa | SNOWBALLs520824F | 1093229 | SNOWBALLs520824F_Ss_ENSE | 19.7 | 32718 | C P | C P | O | ||||||||
Sus_scrofa | porgene10st | 595966 | porgene10st_Ss_ENSE | 44.0 | 49794 | C P | C P | O | ||||||||
Sus_scrofa | porgene11st | 595966 | porgene11st_Ss_ENSE | 44.0 | 49794 | C P | C P | O |