Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Bos_taurus | Bovine | 265627 | Bovine_Bt_ENSE | 35.2 | 12951 | 35.2 | 12951 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Bos_taurus | bovgene10st | 557951 | bovgene10st_Bt_ENSE | 44.8 | 50687 | C P | C P | O | ||||||||
Bos_taurus | bovgene11st | 557951 | bovgene11st_Bt_ENSE | 44.8 | 50687 | C P | C P | O | ||||||||
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_ENSE | 67.0 | 31970 | 67.8 | 34229 | 99.87 | 98.80 | 88.89 | 83.02 | 87.20 | 81.45 | C P | C P | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_ENSE | 42.6 | 32364 | 38.3 | 31561 | 78.60 | 87.38 | 72.60 | 74.45 | 68.73 | 70.48 | C P | C P | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_ENSE | 41.4 | 32364 | 37.3 | 31561 | 78.60 | 87.38 | 72.60 | 74.45 | 68.73 | 70.48 | C P | C P | O |
Canis_familiaris | cangene10st | 657153 | cangene10st_Cf_ENSE | 44.4 | 55863 | C P | C P | O | ||||||||
Canis_familiaris | cangene11st | 621953 | cangene11st_Cf_ENSE | 46.9 | 55863 | 52.9 | 62537 | 95.02 | 84.25 | 80.84 | 72.21 | 77.41 | 69.14 | C P | C P | O |
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_ENSE | 54.9 | 18128 | 54.4 | 17962 | 98.98 | 99.87 | 97.88 | 98.78 | 94.65 | 95.53 | C P | C P | O |
Danio_rerio | zebgene10st | 1245559 | zebgene10st_Dr_ENSE | 31.7 | 87192 | 31.6 | 86533 | 99.42 | 99.89 | 97.01 | 97.75 | 96.84 | 97.58 | C P | C P | O |
Danio_rerio | zebgene11st | 1245558 | zebgene11st_Dr_ENSE | 31.7 | 87192 | 31.6 | 86533 | 99.42 | 99.89 | 97.01 | 97.75 | 96.84 | 97.58 | C P | C P | O |
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_ENSE | 90.1 | 21794 | 90.1 | 21794 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_ENSE | 70.6 | 21704 | 70.6 | 21704 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Equus_caballus | equgene10st | 537520 | equgene10st_EQca_ENSE | 53.8 | 57130 | 53.8 | 57130 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Equus_caballus | equgene11st | 543179 | equgene11st_EQca_ENSE | 53.2 | 57130 | C P | C P | O | ||||||||
Gallus_gallus | Chicken | 424097 | Chicken_Gg_ENSE | 32.1 | 23740 | 32.1 | 23740 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Gallus_gallus | chigene10st | 464100 | chigene10st_Gg_ENSE | 55.4 | 50316 | 55.4 | 50316 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Gallus_gallus | chigene11st | 464100 | chigene11st_Gg_ENSE | 55.4 | 50316 | 55.4 | 50316 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_ENSE | 70.7 | 5366 | 70.5 | 5264 | 99.54 | 99.83 | 91.20 | 92.97 | 90.83 | 92.59 | C P | C P | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_ENSE | 75.4 | 22871 | 75.2 | 22703 | 99.62 | 99.88 | 92.78 | 93.46 | 92.40 | 93.08 | C P | C P | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_ENSE | 69.6 | 44480 | 69.2 | 43891 | 99.14 | 99.80 | 91.92 | 93.16 | 91.56 | 92.79 | C P | C P | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_ENSE | 69.6 | 44480 | 69.2 | 43889 | 99.14 | 99.80 | 91.92 | 93.16 | 91.56 | 92.79 | C P | C P | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_ENSE | 48.2 | 24317 | 46.4 | 23535 | 95.66 | 99.20 | 91.02 | 94.04 | 90.62 | 93.63 | C P | C P | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_ENSE | 57.4 | 73769 | 55.8 | 71971 | 96.65 | 99.36 | 91.20 | 93.48 | 90.74 | 93.01 | C P | C P | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_ENSE | 77.9 | 87583 | 77.7 | 86303 | 99.43 | 99.66 | 91.46 | 92.82 | 91.24 | 92.59 | C P | C P | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_ENSE | 73.5 | 29322 | 73.1 | 28995 | 99.29 | 99.84 | 92.39 | 93.44 | 92.12 | 93.15 | C P | C P | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_ENSE | 73.6 | 29273 | 73.2 | 28952 | 99.29 | 99.84 | 92.40 | 93.42 | 92.12 | 93.14 | C P | C P | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_ENSE | 55.7 | 16898 | 54.2 | 16403 | 96.81 | 99.45 | 91.32 | 94.07 | 91.03 | 93.78 | C P | C P | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_ENSE | 41.1 | 13101 | 39.8 | 12590 | 96.12 | 99.34 | 90.65 | 94.33 | 90.21 | 93.88 | C P | C P | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_ENSE | 26.3 | 8526 | 25.1 | 8224 | 94.44 | 99.00 | 90.65 | 93.98 | 90.45 | 93.77 | C P | C P | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_ENSE | 40.1 | 13774 | 38.9 | 13448 | 96.20 | 99.12 | 90.87 | 93.07 | 90.55 | 92.75 | C P | C P | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_ENSE | 69.6 | 44480 | 69.2 | 43889 | 99.14 | 99.80 | 91.92 | 93.16 | 91.56 | 92.79 | C P | C P | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_ENSE | 48.1 | 24317 | 46.4 | 23533 | 95.66 | 99.20 | 91.02 | 94.05 | 90.62 | 93.64 | C P | C P | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_ENSE | 57.4 | 69556 | 55.9 | 67865 | 96.85 | 99.39 | 91.29 | 93.56 | 90.85 | 93.11 | C P | C P | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_ENSE | 72.2 | 20142 | 72.0 | 19952 | 99.57 | 99.86 | 92.10 | 92.97 | 91.61 | 92.49 | C P | C P | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_ENSE | 30.5 | 489969 | 29.8 | 476418 | 97.14 | 99.32 | 89.15 | 91.69 | 88.99 | 91.52 | C P | C P | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_ENSE | 1.0 | 313 | 1.0 | 298 | 93.80 | 98.55 | 91.69 | 96.31 | 89.46 | 93.96 | C P | C P | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_ENSE | 1.4 | 8834 | 1.4 | 8653 | 94.04 | 95.82 | 92.20 | 94.13 | 87.73 | 89.56 | C P | C P | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_ENSE | 1.9 | 10981 | 1.8 | 10547 | 92.95 | 96.35 | 89.93 | 93.63 | 85.16 | 88.66 | C P | C P | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_ENSE | 1.6 | 2598 | 1.6 | 2547 | 94.22 | 96.23 | 92.38 | 94.23 | 86.22 | 87.95 | C P | C P | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_ENSE | 1.3 | 2035 | 1.2 | 1983 | 94.50 | 96.31 | 93.17 | 95.61 | 88.45 | 90.77 | C P | C P | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_ENSE | 72.9 | 47403 | 72.4 | 46764 | 99.06 | 99.74 | 92.78 | 94.05 | 92.50 | 93.77 | C P | C P | O |
Homo_sapiens | PrimeView | 501271 | PrimeView_Hs_ENSE | 80.1 | 86372 | C P | C P | O | ||||||||
Homo_sapiens | U133AAofAv2 | 259234 | U133AAofAv2_Hs_ENSE | 66.9 | 44570 | C P | C P | O | ||||||||
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_ENSE | 58.1 | 67561 | 56.5 | 66051 | 96.71 | 99.36 | 91.51 | 93.60 | 91.05 | 93.13 | C P | C P | O |
Homo_sapiens | Xcel | 1324676 | Xcel_Hs_ENSE | 47.9 | 82249 | C P | C P | O | ||||||||
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_ENSE | 30.1 | 19915 | 29.8 | 19679 | 98.74 | 99.86 | 91.91 | 93.01 | 91.74 | 92.85 | C P | C P | O |
Homo_sapiens | hugene10st | 788904 | hugene10st_Hs_ENSE | 61.6 | 145790 | 63.6 | 143086 | 98.76 | 95.60 | 88.46 | 90.13 | 88.27 | 89.94 | C P | C P | O |
Homo_sapiens | hugene11st | 803478 | hugene11st_Hs_ENSE | 60.4 | 145705 | 62.4 | 142992 | 98.75 | 95.60 | 88.46 | 90.13 | 88.27 | 89.94 | C P | C P | O |
Homo_sapiens | hugene20st | 1022045 | hugene20st_Hs_ENSE | 51.4 | 127126 | C P | C P | O | ||||||||
Homo_sapiens | hugene21st | 1022045 | hugene21st_Hs_ENSE | 51.4 | 127126 | C P | C P | O | ||||||||
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_ENSE | 34.1 | 29105 | 34.0 | 29072 | 99.74 | 100.00 | 99.89 | 100.00 | 98.17 | 98.28 | C P | C P | O |
Macaca_mulatta | rhegene10st | 810924 | rhegene10st_MAmu_ENSE | 46.6 | 70780 | C P | C P | O | ||||||||
Macaca_mulatta | rhegene11st | 810924 | rhegene11st_MAmu_ENSE | 46.6 | 70780 | C P | C P | O | ||||||||
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_ENSE | 69.5 | 30568 | 69.7 | 32238 | 99.42 | 99.20 | 78.12 | 74.07 | 77.90 | 73.87 | C P | C P | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_ENSE | 40.5 | 14755 | 41.2 | 15627 | 98.11 | 96.46 | 82.05 | 77.47 | 81.71 | 77.15 | C P | C P | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_ENSE | 54.3 | 43057 | 54.7 | 45493 | 98.94 | 98.18 | 78.92 | 74.70 | 78.61 | 74.40 | C P | C P | O |
Mus_musculus | MGU74A | 201964 | MGU74A_Mm_ENSE | 54.1 | 16571 | 54.1 | 17449 | 99.50 | 99.47 | 78.44 | 74.50 | 78.25 | 74.31 | C P | C P | O |
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_ENSE | 62.2 | 18456 | 62.2 | 19398 | 99.51 | 99.44 | 78.38 | 74.57 | 78.13 | 74.33 | C P | C P | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_ENSE | 59.4 | 14205 | 59.5 | 14970 | 98.86 | 98.62 | 80.42 | 76.31 | 80.12 | 76.03 | C P | C P | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_ENSE | 28.0 | 6385 | 28.4 | 6777 | 98.57 | 97.08 | 83.01 | 78.21 | 82.90 | 78.10 | C P | C P | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_ENSE | 69.6 | 30568 | 69.8 | 32238 | 99.42 | 99.20 | 78.12 | 74.07 | 77.90 | 73.87 | C P | C P | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_ENSE | 40.5 | 14755 | 41.2 | 15627 | 98.11 | 96.46 | 82.05 | 77.47 | 81.71 | 77.15 | C P | C P | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_ENSE | 26.4 | 322834 | 26.6 | 334169 | 98.89 | 98.22 | 66.12 | 63.88 | 65.92 | 63.68 | C P | C P | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_ENSE | 55.3 | 43057 | 55.7 | 45493 | 98.94 | 98.18 | 78.92 | 74.70 | 78.61 | 74.40 | C P | C P | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_ENSE | 69.6 | 30568 | 69.8 | 32238 | 99.42 | 99.20 | 78.12 | 74.07 | 77.90 | 73.87 | C P | C P | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_ENSE | 63.2 | 9935 | 63.3 | 10481 | 99.52 | 99.40 | 79.00 | 74.89 | 78.71 | 74.61 | C P | C P | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_ENSE | 46.8 | 8995 | 46.8 | 9388 | 99.64 | 99.53 | 73.24 | 70.17 | 73.07 | 70.01 | C P | C P | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_ENSE | 63.9 | 31526 | 64.1 | 33144 | 99.01 | 98.61 | 80.46 | 76.54 | 80.27 | 76.35 | C P | C P | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_ENSE | 52.1 | 32932 | 52.7 | 34875 | 98.80 | 97.63 | 83.24 | 78.60 | 83.07 | 78.44 | C P | C P | O |
Mus_musculus | mogene10st | 819132 | mogene10st_Mm_ENSE | 58.1 | 126275 | 58.3 | 129955 | 99.08 | 98.82 | 71.04 | 69.03 | 70.86 | 68.85 | C P | C P | O |
Mus_musculus | mogene11st | 828268 | mogene11st_Mm_ENSE | 57.3 | 126212 | 57.4 | 129891 | 99.08 | 98.81 | 71.05 | 69.03 | 70.87 | 68.86 | C P | C P | O |
Oryctolagus_cuniculus | Rabbit2a520535F | 226371 | Rabbit2a520535F_Oc_ENSE | 33.5 | 15283 | C P | C P | O | ||||||||
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_ENSE | 34.6 | 16167 | 34.5 | 16154 | 99.82 | 100.00 | 99.91 | 99.99 | 98.87 | 98.95 | C P | C P | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_ENSE | 43.9 | 15881 | 43.8 | 15868 | 99.82 | 100.00 | 99.91 | 99.99 | 98.91 | 98.99 | C P | C P | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_ENSE | 46.5 | 11379 | 46.4 | 11369 | 99.82 | 100.00 | 99.90 | 99.99 | 98.95 | 99.03 | C P | C P | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_ENSE | 24.0 | 5384 | 23.9 | 5381 | 99.81 | 100.00 | 99.94 | 100.00 | 98.83 | 98.88 | C P | C P | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_ENSE | 50.8 | 7800 | 50.7 | 7795 | 99.77 | 99.98 | 99.92 | 99.99 | 98.69 | 98.76 | C P | C P | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_ENSE | 30.7 | 3959 | 30.7 | 3956 | 99.81 | 100.00 | 99.92 | 100.00 | 98.51 | 98.58 | C P | C P | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_ENSE | 32.9 | 4535 | 32.8 | 4530 | 99.74 | 99.99 | 99.89 | 100.00 | 98.39 | 98.50 | C P | C P | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_ENSE | 63.3 | 1399 | 63.2 | 1400 | 99.77 | 99.98 | 100.00 | 99.93 | 98.28 | 98.21 | C P | C P | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_ENSE | 52.7 | 1031 | 52.6 | 1030 | 99.79 | 100.00 | 99.90 | 100.00 | 99.13 | 99.22 | C P | C P | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_ENSE | 21.2 | 189057 | 21.2 | 189051 | 99.99 | 100.00 | 100.00 | 100.00 | 99.99 | 99.99 | C P | C P | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_ENSE | 35.5 | 16167 | 35.4 | 16154 | 99.82 | 100.00 | 99.91 | 99.99 | 98.87 | 98.95 | C P | C P | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_ENSE | 45.4 | 1683 | 45.4 | 1683 | 99.84 | 100.00 | 100.00 | 100.00 | 98.87 | 98.87 | C P | C P | O |
Rattus_norvegicus | ragene10st | 777760 | ragene10st_Rn_ENSE | 54.1 | 77761 | 54.1 | 77761 | 100.00 | 100.00 | 100.00 | 100.00 | 99.99 | 99.99 | C P | C P | O |
Rattus_norvegicus | ragene11st | 788189 | ragene11st_Rn_ENSE | 53.3 | 77750 | 53.3 | 77750 | 100.00 | 100.00 | 100.00 | 100.00 | 99.99 | 99.99 | C P | C P | O |
Saccharomyces_cerevisiae | YGS98 | 138412 | YGS98_Sc_ENSE | 75.1 | 6243 | 75.1 | 6243 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Saccharomyces_cerevisiae | Yeast2 | 120855 | Yeast2_Sc_ENSE | 51.1 | 5634 | 51.1 | 5634 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Sus_scrofa | Porcine | 265635 | Porcine_Ss_ENSE | 31.5 | 10151 | 16.3 | 7083 | 42.62 | 82.37 | 49.40 | 70.80 | 43.02 | 61.65 | C P | C P | O |
Sus_scrofa | SNOWBALLs520824F | 1093229 | SNOWBALLs520824F_Ss_ENSE | 22.6 | 32956 | 19.7 | 32718 | 66.71 | 76.59 | 67.54 | 68.03 | 61.51 | 61.96 | C P | C P | O |
Sus_scrofa | porgene10st | 595966 | porgene10st_Ss_ENSE | 43.7 | 48317 | 44.0 | 49794 | 77.57 | 77.09 | 73.77 | 71.58 | 70.19 | 68.11 | C P | C P | O |
Sus_scrofa | porgene11st | 595966 | porgene11st_Ss_ENSE | 43.7 | 48317 | 44.0 | 49794 | 77.57 | 77.09 | 73.77 | 71.58 | 70.19 | 68.11 | C P | C P | O |