Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Bos_taurus | Bovine | 265627 | Bovine_Bt_ENST | 42.7 | 10108 | 42.7 | 10108 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Bos_taurus | bovgene10st | 557951 | bovgene10st_Bt_ENST | 72.2 | 20672 | C P | C P | O | ||||||||
Bos_taurus | bovgene11st | 557951 | bovgene11st_Bt_ENST | 72.2 | 20672 | C P | C P | O | ||||||||
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_ENST | 87.4 | 27450 | 88.1 | 26373 | 99.89 | 99.01 | 88.51 | 92.12 | 80.74 | 84.04 | C P | C P | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_ENST | 56.9 | 20994 | 52.6 | 21760 | 83.01 | 89.84 | 75.44 | 72.78 | 46.41 | 44.78 | C P | C P | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_ENST | 55.4 | 20994 | 51.2 | 21760 | 83.01 | 89.84 | 75.44 | 72.78 | 46.41 | 44.78 | C P | C P | O |
Canis_familiaris | cangene10st | 657153 | cangene10st_Cf_ENST | 62.8 | 23250 | C P | C P | O | ||||||||
Canis_familiaris | cangene11st | 621953 | cangene11st_Cf_ENST | 66.4 | 23250 | 73.8 | 25630 | 96.50 | 86.77 | 76.76 | 69.63 | 39.15 | 35.52 | C P | C P | O |
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_ENST | 60.1 | 14559 | 59.9 | 14432 | 99.48 | 99.86 | 98.64 | 99.51 | 98.42 | 99.29 | C P | C P | O |
Danio_rerio | zebgene10st | 1245559 | zebgene10st_Dr_ENST | 50.1 | 46562 | 50.1 | 46136 | 99.67 | 99.82 | 98.39 | 99.30 | 97.68 | 98.58 | C P | C P | O |
Danio_rerio | zebgene11st | 1245558 | zebgene11st_Dr_ENST | 50.1 | 46562 | 50.1 | 46136 | 99.67 | 99.82 | 98.39 | 99.30 | 97.68 | 98.58 | C P | C P | O |
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_ENST | 92.6 | 20830 | 92.7 | 20846 | 100.00 | 99.92 | 100.00 | 99.92 | 100.00 | 99.92 | C P | C P | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_ENST | 74.6 | 22364 | 74.8 | 22430 | 100.00 | 99.69 | 100.00 | 99.71 | 100.00 | 99.71 | C P | C P | O |
Equus_caballus | equgene10st | 537520 | equgene10st_EQca_ENST | 83.3 | 24380 | 83.3 | 24380 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Equus_caballus | equgene11st | 543179 | equgene11st_EQca_ENST | 82.4 | 24380 | C P | C P | O | ||||||||
Gallus_gallus | Chicken | 424097 | Chicken_Gg_ENST | 43.5 | 16547 | 43.5 | 16547 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Gallus_gallus | chigene10st | 464100 | chigene10st_Gg_ENST | 86.7 | 21654 | 86.7 | 21654 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Gallus_gallus | chigene11st | 464100 | chigene11st_Gg_ENST | 86.7 | 21654 | 86.7 | 21654 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_ENST | 78.9 | 6188 | 78.6 | 6087 | 99.48 | 99.88 | 92.66 | 94.20 | 92.31 | 93.84 | C P | C P | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_ENST | 84.7 | 33079 | 84.7 | 31919 | 99.77 | 99.85 | 91.57 | 94.89 | 91.37 | 94.69 | C P | C P | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_ENST | 76.8 | 56701 | 76.5 | 54730 | 99.35 | 99.67 | 91.48 | 94.78 | 91.10 | 94.39 | C P | C P | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_ENST | 76.8 | 56701 | 76.6 | 54730 | 99.35 | 99.67 | 91.48 | 94.78 | 91.10 | 94.39 | C P | C P | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_ENST | 47.9 | 27030 | 48.2 | 26635 | 97.22 | 96.65 | 92.12 | 93.49 | 91.70 | 93.06 | C P | C P | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_ENST | 59.0 | 83801 | 59.5 | 81476 | 97.97 | 97.28 | 91.38 | 93.99 | 90.85 | 93.45 | C P | C P | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_ENST | 84.6 | 91815 | 84.6 | 88501 | 99.49 | 99.51 | 91.34 | 94.76 | 90.82 | 94.22 | C P | C P | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_ENST | 78.1 | 36428 | 77.9 | 35552 | 99.46 | 99.71 | 92.32 | 94.59 | 91.98 | 94.25 | C P | C P | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_ENST | 78.1 | 36387 | 77.9 | 35516 | 99.46 | 99.71 | 92.32 | 94.58 | 91.98 | 94.24 | C P | C P | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_ENST | 54.8 | 19483 | 55.0 | 19040 | 97.96 | 97.55 | 91.94 | 94.08 | 91.56 | 93.69 | C P | C P | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_ENST | 39.5 | 14618 | 40.6 | 14334 | 97.33 | 94.61 | 90.37 | 92.16 | 90.07 | 91.85 | C P | C P | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_ENST | 24.5 | 9713 | 25.7 | 9830 | 95.63 | 91.14 | 91.79 | 90.70 | 91.66 | 90.57 | C P | C P | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_ENST | 39.8 | 15254 | 40.0 | 15011 | 96.81 | 96.36 | 91.46 | 92.94 | 91.18 | 92.65 | C P | C P | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_ENST | 76.8 | 56701 | 76.6 | 54730 | 99.35 | 99.67 | 91.48 | 94.78 | 91.10 | 94.39 | C P | C P | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_ENST | 47.8 | 27030 | 48.1 | 26635 | 97.22 | 96.65 | 92.12 | 93.49 | 91.70 | 93.06 | C P | C P | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_ENST | 59.7 | 82329 | 60.1 | 80134 | 98.11 | 97.46 | 91.45 | 93.96 | 90.94 | 93.43 | C P | C P | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_ENST | 77.4 | 24314 | 77.2 | 23861 | 99.67 | 99.82 | 92.86 | 94.63 | 92.49 | 94.25 | C P | C P | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_ENST | 29.2 | 164370 | 29.4 | 157421 | 97.39 | 96.72 | 89.27 | 93.21 | 88.28 | 92.17 | C P | C P | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_ENST | 0.5 | 439 | 0.5 | 435 | 96.74 | 92.43 | 91.12 | 91.95 | 91.12 | 91.95 | C P | C P | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_ENST | 0.6 | 9435 | 0.6 | 9599 | 95.90 | 93.67 | 93.56 | 91.96 | 93.50 | 91.91 | C P | C P | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_ENST | 0.9 | 12903 | 0.9 | 12653 | 94.74 | 94.11 | 90.73 | 92.52 | 90.68 | 92.47 | C P | C P | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_ENST | 0.8 | 3353 | 0.8 | 3436 | 96.63 | 94.17 | 95.02 | 92.72 | 95.02 | 92.72 | C P | C P | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_ENST | 0.6 | 2537 | 0.6 | 2612 | 96.46 | 93.71 | 93.77 | 91.08 | 93.77 | 91.08 | C P | C P | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_ENST | 78.5 | 62357 | 78.4 | 60422 | 99.18 | 99.35 | 91.94 | 94.88 | 91.69 | 94.63 | C P | C P | O |
Homo_sapiens | PrimeView | 501271 | PrimeView_Hs_ENST | 87.3 | 91643 | C P | C P | O | ||||||||
Homo_sapiens | U133AAofAv2 | 259234 | U133AAofAv2_Hs_ENST | 73.7 | 56719 | C P | C P | O | ||||||||
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_ENST | 57.3 | 77290 | 57.6 | 75446 | 97.84 | 97.28 | 91.54 | 93.78 | 91.09 | 93.31 | C P | C P | O |
Homo_sapiens | Xcel | 1324676 | Xcel_Hs_ENST | 46.4 | 87631 | C P | C P | O | ||||||||
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_ENST | 34.4 | 22295 | 34.4 | 21751 | 98.84 | 99.03 | 92.14 | 94.44 | 91.84 | 94.13 | C P | C P | O |
Homo_sapiens | hugene10st | 788904 | hugene10st_Hs_ENST | 73.1 | 134444 | 73.0 | 126242 | 99.39 | 99.45 | 89.83 | 95.66 | 89.09 | 94.88 | C P | C P | O |
Homo_sapiens | hugene11st | 803478 | hugene11st_Hs_ENST | 71.6 | 134429 | 71.6 | 126228 | 99.39 | 99.45 | 89.83 | 95.66 | 89.09 | 94.88 | C P | C P | O |
Homo_sapiens | hugene20st | 1022045 | hugene20st_Hs_ENST | 54.1 | 141911 | C P | C P | O | ||||||||
Homo_sapiens | hugene21st | 1022045 | hugene21st_Hs_ENST | 54.1 | 141911 | C P | C P | O | ||||||||
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_ENST | 36.8 | 23864 | 36.8 | 23864 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Macaca_mulatta | rhegene10st | 810924 | rhegene10st_MAmu_ENST | 62.3 | 35825 | C P | C P | O | ||||||||
Macaca_mulatta | rhegene11st | 810924 | rhegene11st_MAmu_ENST | 62.3 | 35825 | C P | C P | O | ||||||||
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_ENST | 77.8 | 30680 | 78.0 | 33655 | 99.49 | 99.28 | 97.15 | 88.57 | 96.51 | 87.98 | C P | C P | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_ENST | 41.9 | 14564 | 42.1 | 15935 | 97.80 | 97.23 | 96.02 | 87.76 | 95.32 | 87.12 | C P | C P | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_ENST | 59.0 | 41493 | 59.2 | 45484 | 98.90 | 98.56 | 96.83 | 88.34 | 96.00 | 87.57 | C P | C P | O |
Mus_musculus | MGU74A | 201964 | MGU74A_Mm_ENST | 58.7 | 16646 | 58.8 | 18118 | 99.57 | 99.43 | 97.10 | 89.22 | 96.62 | 88.77 | C P | C P | O |
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_ENST | 67.3 | 18484 | 67.5 | 20106 | 99.59 | 99.39 | 97.12 | 89.28 | 96.56 | 88.77 | C P | C P | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_ENST | 61.8 | 14178 | 61.9 | 15521 | 98.79 | 98.64 | 96.90 | 88.51 | 96.11 | 87.79 | C P | C P | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_ENST | 28.1 | 6824 | 28.4 | 7588 | 98.46 | 97.37 | 96.98 | 87.22 | 96.60 | 86.87 | C P | C P | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_ENST | 77.9 | 30680 | 78.1 | 33655 | 99.49 | 99.28 | 97.15 | 88.57 | 96.51 | 87.98 | C P | C P | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_ENST | 41.9 | 14564 | 42.2 | 15935 | 97.80 | 97.23 | 96.02 | 87.76 | 95.32 | 87.12 | C P | C P | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_ENST | 26.2 | 76394 | 26.4 | 81690 | 98.80 | 97.83 | 96.33 | 90.08 | 94.29 | 88.18 | C P | C P | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_ENST | 60.1 | 41493 | 60.3 | 45484 | 98.90 | 98.56 | 96.83 | 88.34 | 96.00 | 87.57 | C P | C P | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_ENST | 77.9 | 30680 | 78.1 | 33655 | 99.49 | 99.28 | 97.15 | 88.57 | 96.51 | 87.98 | C P | C P | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_ENST | 66.5 | 9986 | 66.6 | 10913 | 99.59 | 99.33 | 97.12 | 88.87 | 96.61 | 88.40 | C P | C P | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_ENST | 53.7 | 7862 | 53.8 | 8586 | 99.75 | 99.45 | 97.25 | 89.05 | 96.71 | 88.55 | C P | C P | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_ENST | 70.4 | 33731 | 70.8 | 36820 | 99.00 | 98.49 | 96.74 | 88.62 | 96.26 | 88.18 | C P | C P | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_ENST | 55.1 | 34979 | 55.5 | 38149 | 98.72 | 98.04 | 96.75 | 88.71 | 96.32 | 88.32 | C P | C P | O |
Mus_musculus | mogene10st | 819132 | mogene10st_Mm_ENST | 75.3 | 68361 | 75.7 | 73174 | 99.17 | 98.67 | 96.63 | 90.28 | 95.20 | 88.94 | C P | C P | O |
Mus_musculus | mogene11st | 828268 | mogene11st_Mm_ENST | 74.3 | 68357 | 74.7 | 73170 | 99.17 | 98.66 | 96.63 | 90.27 | 95.20 | 88.94 | C P | C P | O |
Oryctolagus_cuniculus | Rabbit2a520535F | 226371 | Rabbit2a520535F_Oc_ENST | 63.7 | 17430 | C P | C P | O | ||||||||
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_ENST | 39.5 | 17001 | 39.5 | 17001 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_ENST | 50.4 | 16689 | 50.4 | 16689 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_ENST | 53.6 | 12693 | 53.6 | 12693 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_ENST | 26.8 | 5752 | 26.8 | 5752 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_ENST | 57.3 | 6574 | 57.3 | 6574 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_ENST | 32.3 | 4247 | 32.3 | 4247 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_ENST | 35.4 | 4722 | 35.4 | 4722 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_ENST | 70.3 | 1249 | 70.3 | 1249 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_ENST | 59.3 | 739 | 59.3 | 739 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_ENST | 21.5 | 31785 | 21.5 | 31785 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_ENST | 40.6 | 17001 | 40.6 | 17001 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_ENST | 53.2 | 1869 | 53.2 | 1869 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | ragene10st | 777760 | ragene10st_Rn_ENST | 71.6 | 32037 | 71.6 | 32037 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | ragene11st | 788189 | ragene11st_Rn_ENST | 70.6 | 32034 | 70.6 | 32034 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Saccharomyces_cerevisiae | YGS98 | 138412 | YGS98_Sc_ENST | 74.3 | 6090 | 75.1 | 6167 | 100.00 | 98.85 | 100.00 | 98.75 | 100.00 | 98.75 | C P | C P | O |
Saccharomyces_cerevisiae | Yeast2 | 120855 | Yeast2_Sc_ENST | 51.3 | 5603 | 51.3 | 5605 | 100.00 | 100.00 | 100.00 | 99.96 | 100.00 | 99.96 | C P | C P | O |
Sus_scrofa | Porcine | 265635 | Porcine_Ss_ENST | 39.0 | 8826 | 21.1 | 5484 | 46.03 | 85.17 | 48.16 | 77.52 | 27.17 | 43.73 | C P | C P | O |
Sus_scrofa | SNOWBALLs520824F | 1093229 | SNOWBALLs520824F_Ss_ENST | 34.2 | 17475 | 30.7 | 15924 | 70.93 | 79.02 | 67.19 | 73.74 | 25.05 | 27.49 | C P | C P | O |
Sus_scrofa | porgene10st | 595966 | porgene10st_Ss_ENST | 62.7 | 19489 | 59.0 | 16886 | 75.62 | 80.25 | 64.81 | 74.80 | 31.11 | 35.91 | C P | C P | O |
Sus_scrofa | porgene11st | 595966 | porgene11st_Ss_ENST | 62.7 | 19489 | 59.0 | 16886 | 75.62 | 80.25 | 64.81 | 74.80 | 31.11 | 35.91 | C P | C P | O |