Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Bos_taurus | Bovine | 265627 | Bovine_Bt_ENSE | 35.2 | 12956 | 35.2 | 12951 | 99.87 | 100.00 | 99.96 | 100.00 | 99.24 | 99.27 | C P | C P | O |
Bos_taurus | bovgene10st | 557951 | bovgene10st_Bt_ENSE | 44.8 | 50690 | 44.8 | 50687 | 99.98 | 100.00 | 99.99 | 100.00 | 99.97 | 99.97 | C P | C P | O |
Bos_taurus | bovgene11st | 557951 | bovgene11st_Bt_ENSE | 44.8 | 50690 | 44.8 | 50687 | 99.98 | 100.00 | 99.99 | 100.00 | 99.97 | 99.97 | C P | C P | O |
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_ENSE | 67.0 | 31970 | 67.0 | 31970 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_ENSE | 42.6 | 32364 | 42.6 | 32364 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_ENSE | 41.4 | 32364 | 41.4 | 32364 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Canis_familiaris | cangene10st | 657153 | cangene10st_Cf_ENSE | 44.4 | 55863 | 44.4 | 55863 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Canis_familiaris | cangene11st | 621953 | cangene11st_Cf_ENSE | 46.9 | 55863 | 46.9 | 55863 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_ENSE | 55.0 | 18146 | 54.9 | 18128 | 99.83 | 99.95 | 92.49 | 92.58 | 92.46 | 92.55 | C P | C P | O |
Danio_rerio | zebgene10st | 1245559 | zebgene10st_Dr_ENSE | 31.7 | 87259 | 31.7 | 87192 | 99.79 | 99.83 | 92.51 | 92.58 | 92.45 | 92.52 | C P | C P | O |
Danio_rerio | zebgene11st | 1245558 | zebgene11st_Dr_ENSE | 31.7 | 87259 | 31.7 | 87192 | 99.79 | 99.83 | 92.51 | 92.58 | 92.45 | 92.52 | C P | C P | O |
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_ENSE | 90.1 | 23197 | 90.1 | 21794 | 99.81 | 99.83 | 68.99 | 73.43 | 66.90 | 71.20 | C P | C P | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_ENSE | 70.6 | 23149 | 70.6 | 21704 | 99.50 | 99.62 | 69.83 | 74.48 | 67.67 | 72.18 | C P | C P | O |
Equus_caballus | equgene10st | 537520 | equgene10st_EQca_ENSE | 53.8 | 57130 | 53.8 | 57130 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Equus_caballus | equgene11st | 543179 | equgene11st_EQca_ENSE | 53.2 | 57130 | 53.2 | 57130 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Gallus_gallus | Chicken | 424097 | Chicken_Gg_ENSE | 32.1 | 23741 | 32.1 | 23740 | 99.98 | 100.00 | 100.00 | 100.00 | 99.92 | 99.92 | C P | C P | O |
Gallus_gallus | chigene10st | 464100 | chigene10st_Gg_ENSE | 55.4 | 50318 | 55.4 | 50316 | 99.98 | 100.00 | 100.00 | 100.00 | 99.97 | 99.98 | C P | C P | O |
Gallus_gallus | chigene11st | 464100 | chigene11st_Gg_ENSE | 55.4 | 50318 | 55.4 | 50316 | 99.98 | 100.00 | 100.00 | 100.00 | 99.97 | 99.98 | C P | C P | O |
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_ENSE | 71.0 | 5593 | 70.7 | 5366 | 99.56 | 100.00 | 69.25 | 72.18 | 68.84 | 71.75 | C P | C P | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_ENSE | 75.7 | 23935 | 75.4 | 22871 | 99.61 | 99.93 | 74.66 | 78.14 | 74.21 | 77.66 | C P | C P | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_ENSE | 70.1 | 46589 | 69.6 | 44480 | 99.28 | 99.92 | 72.91 | 76.37 | 72.50 | 75.93 | C P | C P | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_ENSE | 70.1 | 46589 | 69.6 | 44480 | 99.28 | 99.92 | 72.91 | 76.37 | 72.50 | 75.93 | C P | C P | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_ENSE | 49.3 | 25626 | 48.2 | 24317 | 97.65 | 99.89 | 76.63 | 80.76 | 76.26 | 80.36 | C P | C P | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_ENSE | 58.4 | 77533 | 57.4 | 73769 | 98.20 | 99.90 | 74.00 | 77.78 | 73.54 | 77.29 | C P | C P | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_ENSE | 78.3 | 91570 | 77.9 | 87583 | 99.46 | 99.94 | 68.42 | 71.53 | 68.25 | 71.36 | C P | C P | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_ENSE | 73.8 | 30742 | 73.5 | 29322 | 99.59 | 99.93 | 72.77 | 76.30 | 72.43 | 75.94 | C P | C P | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_ENSE | 73.8 | 30692 | 73.6 | 29273 | 99.59 | 99.93 | 72.85 | 76.38 | 72.50 | 76.02 | C P | C P | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_ENSE | 56.4 | 17765 | 55.7 | 16898 | 98.57 | 99.87 | 75.73 | 79.62 | 75.42 | 79.29 | C P | C P | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_ENSE | 41.9 | 13726 | 41.1 | 13101 | 97.99 | 99.91 | 75.94 | 79.56 | 75.38 | 78.98 | C P | C P | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_ENSE | 27.2 | 8986 | 26.3 | 8526 | 96.53 | 99.83 | 76.23 | 80.34 | 75.93 | 80.03 | C P | C P | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_ENSE | 41.2 | 14596 | 40.1 | 13774 | 97.07 | 99.88 | 73.71 | 78.10 | 73.49 | 77.87 | C P | C P | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_ENSE | 70.1 | 46589 | 69.6 | 44480 | 99.28 | 99.92 | 72.91 | 76.37 | 72.50 | 75.93 | C P | C P | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_ENSE | 49.2 | 25626 | 48.1 | 24317 | 97.65 | 99.89 | 76.63 | 80.76 | 76.26 | 80.36 | C P | C P | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_ENSE | 58.3 | 73095 | 57.4 | 69556 | 98.30 | 99.90 | 74.81 | 78.62 | 74.40 | 78.18 | C P | C P | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_ENSE | 72.5 | 21108 | 72.2 | 20142 | 99.57 | 100.00 | 71.48 | 74.91 | 70.82 | 74.22 | C P | C P | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_ENSE | 31.1 | 512120 | 30.5 | 489969 | 98.05 | 99.91 | 60.79 | 63.54 | 60.68 | 63.43 | C P | C P | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_ENSE | 1.1 | 329 | 1.0 | 313 | 89.32 | 99.54 | 82.07 | 86.26 | 75.08 | 78.91 | C P | C P | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_ENSE | 1.5 | 9374 | 1.4 | 8834 | 91.50 | 99.81 | 79.01 | 83.84 | 72.79 | 77.24 | C P | C P | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_ENSE | 2.0 | 11693 | 1.9 | 10981 | 91.29 | 99.79 | 78.21 | 83.28 | 71.33 | 75.96 | C P | C P | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_ENSE | 1.7 | 2687 | 1.6 | 2598 | 92.20 | 99.84 | 82.21 | 85.03 | 74.10 | 76.64 | C P | C P | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_ENSE | 1.4 | 2099 | 1.3 | 2035 | 92.14 | 99.74 | 82.94 | 85.55 | 75.32 | 77.69 | C P | C P | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_ENSE | 73.8 | 49769 | 72.9 | 47403 | 98.74 | 99.92 | 75.46 | 79.23 | 75.11 | 78.86 | C P | C P | O |
Homo_sapiens | PrimeView | 501271 | PrimeView_Hs_ENSE | 80.5 | 90282 | 80.1 | 86372 | 99.46 | 99.94 | 68.71 | 71.82 | 68.54 | 71.64 | C P | C P | O |
Homo_sapiens | U133AAofAv2 | 259234 | U133AAofAv2_Hs_ENSE | 67.3 | 46683 | 66.9 | 44570 | 99.29 | 99.92 | 72.89 | 76.34 | 72.47 | 75.91 | C P | C P | O |
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_ENSE | 59.1 | 71031 | 58.1 | 67561 | 98.16 | 99.88 | 75.59 | 79.47 | 75.13 | 78.99 | C P | C P | O |
Homo_sapiens | Xcel | 1324676 | Xcel_Hs_ENSE | 48.9 | 86491 | 47.9 | 82249 | 97.78 | 99.87 | 76.79 | 80.75 | 76.13 | 80.06 | C P | C P | O |
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_ENSE | 30.5 | 20777 | 30.1 | 19915 | 98.63 | 99.94 | 67.83 | 70.77 | 67.68 | 70.61 | C P | C P | O |
Homo_sapiens | hta20 | 7577330 | hta20_Hs_ENSE | 56.5 | 584193 | C P | C P | O | ||||||||
Homo_sapiens | hugene10st | 788904 | hugene10st_Hs_ENSE | 62.3 | 153043 | 61.6 | 145790 | 98.87 | 99.95 | 70.26 | 73.76 | 70.16 | 73.65 | C P | C P | O |
Homo_sapiens | hugene11st | 803478 | hugene11st_Hs_ENSE | 61.0 | 152955 | 60.4 | 145705 | 98.87 | 99.95 | 70.25 | 73.75 | 70.15 | 73.64 | C P | C P | O |
Homo_sapiens | hugene20st | 1022045 | hugene20st_Hs_ENSE | 52.0 | 133608 | 51.4 | 127126 | 98.70 | 99.79 | 81.14 | 85.27 | 80.99 | 85.11 | C P | C P | O |
Homo_sapiens | hugene21st | 1022045 | hugene21st_Hs_ENSE | 52.0 | 133608 | 51.4 | 127126 | 98.70 | 99.79 | 81.14 | 85.27 | 80.99 | 85.11 | C P | C P | O |
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_ENSE | 34.1 | 29105 | 34.1 | 29105 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Macaca_mulatta | rhegene10st | 810924 | rhegene10st_MAmu_ENSE | 46.6 | 70780 | 46.6 | 70780 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Macaca_mulatta | rhegene11st | 810924 | rhegene11st_MAmu_ENSE | 46.6 | 70780 | 46.6 | 70780 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_ENSE | 69.6 | 30607 | 69.5 | 30568 | 99.79 | 99.91 | 81.62 | 81.72 | 81.20 | 81.30 | C P | C P | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_ENSE | 41.5 | 15067 | 40.5 | 14755 | 97.56 | 99.95 | 84.74 | 86.53 | 84.54 | 86.33 | C P | C P | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_ENSE | 54.8 | 43411 | 54.3 | 43057 | 98.96 | 99.93 | 82.11 | 82.78 | 81.73 | 82.40 | C P | C P | O |
Mus_musculus | MGU74A | 201964 | MGU74A_Mm_ENSE | 54.1 | 16581 | 54.1 | 16571 | 99.80 | 99.85 | 82.22 | 82.27 | 81.38 | 81.43 | C P | C P | O |
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_ENSE | 62.2 | 18461 | 62.2 | 18456 | 99.82 | 99.86 | 82.11 | 82.13 | 81.32 | 81.34 | C P | C P | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_ENSE | 59.7 | 14280 | 59.4 | 14205 | 99.40 | 99.90 | 83.53 | 83.97 | 82.96 | 83.40 | C P | C P | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_ENSE | 28.5 | 6484 | 28.0 | 6385 | 98.06 | 99.94 | 85.58 | 86.91 | 84.99 | 86.31 | C P | C P | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_ENSE | 69.7 | 30607 | 69.6 | 30568 | 99.79 | 99.91 | 81.62 | 81.72 | 81.20 | 81.30 | C P | C P | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_ENSE | 41.5 | 15067 | 40.5 | 14755 | 97.56 | 99.95 | 84.74 | 86.53 | 84.54 | 86.33 | C P | C P | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_ENSE | 26.7 | 325446 | 26.4 | 322834 | 98.93 | 99.99 | 69.89 | 70.46 | 69.88 | 70.45 | C P | C P | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_ENSE | 55.8 | 43411 | 55.3 | 43057 | 98.96 | 99.93 | 82.11 | 82.78 | 81.73 | 82.40 | C P | C P | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_ENSE | 69.7 | 30607 | 69.6 | 30568 | 99.79 | 99.91 | 81.62 | 81.72 | 81.20 | 81.30 | C P | C P | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_ENSE | 63.1 | 9933 | 63.2 | 9935 | 99.84 | 99.68 | 82.64 | 82.63 | 80.99 | 80.98 | C P | C P | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_ENSE | 46.8 | 8999 | 46.8 | 8995 | 99.83 | 99.77 | 76.00 | 76.03 | 74.74 | 74.77 | C P | C P | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_ENSE | 64.3 | 31717 | 63.9 | 31526 | 99.27 | 99.94 | 84.62 | 85.13 | 84.36 | 84.88 | C P | C P | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_ENSE | 52.7 | 33300 | 52.1 | 32932 | 98.55 | 99.85 | 86.48 | 87.44 | 85.79 | 86.75 | C P | C P | O |
Mus_musculus | mogene10st | 819132 | mogene10st_Mm_ENSE | 58.5 | 126655 | 58.1 | 126275 | 99.34 | 99.99 | 75.27 | 75.50 | 75.26 | 75.49 | C P | C P | O |
Mus_musculus | mogene11st | 828268 | mogene11st_Mm_ENSE | 57.6 | 126592 | 57.3 | 126212 | 99.34 | 99.99 | 75.28 | 75.50 | 75.26 | 75.49 | C P | C P | O |
Mus_musculus | mogene20st | 767405 | mogene20st_Mm_ENSE | 53.8 | 94525 | C P | C P | O | ||||||||
Mus_musculus | mogene21st | 767405 | mogene21st_Mm_ENSE | 53.8 | 94525 | C P | C P | O | ||||||||
Oryctolagus_cuniculus | Rabbit2a520535F | 226371 | Rabbit2a520535F_Oc_ENSE | 33.5 | 15283 | 33.5 | 15283 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_ENSE | 35.5 | 14980 | 34.6 | 16167 | 87.77 | 90.13 | 82.76 | 76.68 | 78.85 | 73.06 | C P | C P | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_ENSE | 44.5 | 14576 | 43.9 | 15881 | 89.04 | 90.31 | 83.62 | 76.75 | 79.74 | 73.19 | C P | C P | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_ENSE | 47.6 | 10579 | 46.5 | 11379 | 88.56 | 90.80 | 82.94 | 77.11 | 79.46 | 73.87 | C P | C P | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_ENSE | 24.7 | 5032 | 24.0 | 5384 | 86.23 | 88.87 | 81.60 | 76.26 | 77.54 | 72.47 | C P | C P | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_ENSE | 51.6 | 7206 | 50.8 | 7800 | 89.83 | 91.14 | 83.08 | 76.76 | 80.16 | 74.05 | C P | C P | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_ENSE | 31.9 | 3767 | 30.7 | 3959 | 87.30 | 90.57 | 81.60 | 77.65 | 78.05 | 74.26 | C P | C P | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_ENSE | 34.1 | 4295 | 32.9 | 4535 | 87.34 | 90.40 | 82.98 | 78.59 | 79.25 | 75.06 | C P | C P | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_ENSE | 61.6 | 1246 | 63.3 | 1399 | 93.28 | 90.75 | 84.03 | 74.84 | 80.74 | 71.91 | C P | C P | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_ENSE | 54.5 | 960 | 52.7 | 1031 | 88.98 | 92.00 | 82.08 | 76.43 | 78.54 | 73.13 | C P | C P | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_ENSE | 20.7 | 165778 | 21.2 | 189057 | 90.98 | 88.98 | 87.24 | 76.50 | 85.01 | 74.55 | C P | C P | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_ENSE | 36.4 | 14980 | 35.5 | 16167 | 87.77 | 90.13 | 82.76 | 76.68 | 78.85 | 73.06 | C P | C P | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_ENSE | 45.6 | 1540 | 45.4 | 1683 | 89.48 | 89.76 | 83.05 | 76.00 | 79.87 | 73.08 | C P | C P | O |
Rattus_norvegicus | ragene10st | 777760 | ragene10st_Rn_ENSE | 46.9 | 66716 | 54.1 | 77761 | 90.72 | 78.71 | 87.86 | 75.38 | 85.51 | 73.37 | C P | C P | O |
Rattus_norvegicus | ragene11st | 788189 | ragene11st_Rn_ENSE | 46.2 | 66711 | 53.3 | 77750 | 90.70 | 78.69 | 87.86 | 75.39 | 85.51 | 73.37 | C P | C P | O |
Rattus_norvegicus | ragene20st | 675529 | ragene20st_Rn_ENSE | 38.6 | 49656 | C P | C P | O | ||||||||
Rattus_norvegicus | ragene21st | 675529 | ragene21st_Rn_ENSE | 38.6 | 49656 | C P | C P | O | ||||||||
Saccharomyces_cerevisiae | YGS98 | 138412 | YGS98_Sc_ENSE | 75.1 | 6243 | 75.1 | 6243 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Saccharomyces_cerevisiae | Yeast2 | 120855 | Yeast2_Sc_ENSE | 51.1 | 5634 | 51.1 | 5634 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P | C P | O |
Sus_scrofa | Porcine | 265635 | Porcine_Ss_ENSE | 32.3 | 11283 | 31.5 | 10151 | 96.77 | 99.38 | 87.75 | 97.54 | 87.33 | 97.06 | C P | C P | O |
Sus_scrofa | SNOWBALLs520824F | 1093229 | SNOWBALLs520824F_Ss_ENSE | 23.6 | 36786 | 22.6 | 32956 | 95.67 | 99.72 | 87.24 | 97.38 | 86.82 | 96.90 | C P | C P | O |
Sus_scrofa | porgene10st | 595966 | porgene10st_Ss_ENSE | 44.2 | 51631 | 43.7 | 48317 | 98.79 | 99.89 | 91.49 | 97.76 | 91.30 | 97.56 | C P | C P | O |
Sus_scrofa | porgene11st | 595966 | porgene11st_Ss_ENSE | 44.2 | 51631 | 43.7 | 48317 | 98.79 | 99.89 | 91.49 | 97.76 | 91.30 | 97.56 | C P | C P | O |