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Download Custom CDF (version 7)

We want to apologize that we mixed different genome assembly in creating ENTREZ custom CDFs. After investigation, we found that the mixture of difference assembly make the dog and zebra fish ENTREZ Gene CDF useless but has relative minor impact on ENTREZ Gene CDFs for other species. The summaries are in table 1-3 in the spreadsheet.

This problem will be corrected in the next release of custom CDF in March, 2007.

Human     Chimpanzee    Mouse        Rat    Arabidopsis    Dog    Fruitfly    Zebrafish    Chicken    Rice    Grape

Application File Type to Download
Linux/MacOS 10 R Packages Source CDF Package; Source Probe Package needed for GCRMA
Windows R Packages Win32 CDF Package; Win32 Probe Package needed for GCRMA
Non-R Program under Windows ASCII CDF, "XXX_tab" file in "CDF&Map&Group" needed for GCRMA
Species Chip Type CDF File Type CDF File Name Source CDF Win32 CDF Source Probe Win32 Probe CDF&Map&Group Best Accession
Arabidopsis thaliana AtGenome AFFY N/A N/A N/A N/A N/A N/A Acc
Arabidopsis thaliana AtGenome REFSEQ AtGenome_At_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Arabidopsis thaliana AtGenome TIGR AtGenome_At_TIGR_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Arabidopsis thaliana AtH1 AFFY N/A N/A N/A N/A N/A N/A Acc
Arabidopsis thaliana AtH1 REFSEQ AtH1_At_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Arabidopsis thaliana AtH1 TIGR AtH1_At_TIGR_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Canis familiaris CfCanine2 AFFY N/A N/A N/A N/A N/A N/A Acc
Canis familiaris CfCanine2 ENSE CfCanine2_Cf_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Canis familiaris CfCanine2 ENSG CfCanine2_Cf_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Canis familiaris CfCanine2 ENST CfCanine2_Cf_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Canis familiaris CfCanine2 ENTREZG CfCanine2_Cf_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Canis familiaris CfCanine2 REFSEQ CfCanine2_Cf_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Canis familiaris CfCanine2 UG CfCanine2_Cf_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmDrosophila2 AFFY N/A N/A N/A N/A N/A N/A Acc
Drosophila melanogaster DmDrosophila2 ENSE DmDrosophila2_Dm_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Drosophila melanogaster DmDrosophila2 ENSG DmDrosophila2_Dm_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmDrosophila2 ENST DmDrosophila2_Dm_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmDrosophila2 REFSEQ DmDrosophila2_Dm_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmDrosophila2 UG DmDrosophila2_Dm_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmGenome1 AFFY N/A N/A N/A N/A N/A N/A Acc
Drosophila melanogaster DmGenome1 ENSE DmGenome1_Dm_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Drosophila melanogaster DmGenome1 ENSG DmGenome1_Dm_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmGenome1 ENST DmGenome1_Dm_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmGenome1 REFSEQ DmGenome1_Dm_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Drosophila melanogaster DmGenome1 UG DmGenome1_Dm_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Danio rerio DrZebrafish AFFY N/A N/A N/A N/A N/A N/A Acc
Danio rerio DrZebrafish ENSE DrZebrafish_Dr_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Danio rerio DrZebrafish ENSG DrZebrafish_Dr_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Danio rerio DrZebrafish ENST DrZebrafish_Dr_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Danio rerio DrZebrafish ENTREZG DrZebrafish_Dr_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Danio rerio DrZebrafish REFSEQ DrZebrafish_Dr_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Danio rerio DrZebrafish UG DrZebrafish_Dr_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Gallus gallus GgChicken AFFY N/A N/A N/A N/A N/A N/A Acc
Gallus gallus GgChicken ENSE GgChicken_Gg_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Gallus gallus GgChicken ENSG GgChicken_Gg_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Gallus gallus GgChicken ENST GgChicken_Gg_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Gallus gallus GgChicken REFSEQ GgChicken_Gg_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Gallus gallus GgChicken UG GgChicken_Gg_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133A AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens Hs133A ENSE Hs133A_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens Hs133A ENSG Hs133A_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133A ENST Hs133A_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133A ENTREZG Hs133A_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133A REFSEQ Hs133A_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133A UG Hs133A_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133Av2 AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens Hs133Av2 ENSE Hs133Av2_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens Hs133Av2 ENSG Hs133Av2_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133Av2 ENST Hs133Av2_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133Av2 ENTREZG Hs133Av2_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133Av2 REFSEQ Hs133Av2_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133Av2 UG Hs133Av2_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133B AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens Hs133B ENSE Hs133B_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens Hs133B ENSG Hs133B_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133B ENST Hs133B_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133B ENTREZG Hs133B_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133B REFSEQ Hs133B_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133B UG Hs133B_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133P AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens Hs133P ENSE Hs133P_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens Hs133P ENSG Hs133P_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133P ENST Hs133P_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133P ENTREZG Hs133P_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133P REFSEQ Hs133P_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133P UG Hs133P_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133X AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens Hs133X ENSE Hs133X_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens Hs133X ENSG Hs133X_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133X ENST Hs133X_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133X ENTREZG Hs133X_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133X REFSEQ Hs133X_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs133X UG Hs133X_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs95Av2 AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens Hs95Av2 ENSE Hs95Av2_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens Hs95Av2 ENSG Hs95Av2_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs95Av2 ENST Hs95Av2_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs95Av2 ENTREZG Hs95Av2_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs95Av2 REFSEQ Hs95Av2_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens Hs95Av2 UG Hs95Av2_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsEx10stv2 AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens HsEx10stv2 ENSE HsEx10stv2_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens HsEx10stv2 ENSG HsEx10stv2_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsEx10stv2 ENST HsEx10stv2_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsEx10stv2 ENTREZG HsEx10stv2_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsEx10stv2 REFSEQ HsEx10stv2_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsEx10stv2 UG HsEx10stv2_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsFocus AFFY N/A N/A N/A N/A N/A N/A Acc
Homo sapiens HsFocus ENSE HsFocus_Hs_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Homo sapiens HsFocus ENSG HsFocus_Hs_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsFocus ENST HsFocus_Hs_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsFocus ENTREZG HsFocus_Hs_ENTREZG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsFocus REFSEQ HsFocus_Hs_REFSEQ_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Homo sapiens HsFocus UG HsFocus_Hs_UG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Mus musculus Mm11KsubA AFFY N/A N/A N/A N/A N/A N/A Acc
Mus musculus Mm11KsubA ENSE Mm11KsubA_Mm_ENSE_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group N/A
Mus musculus Mm11KsubA ENSG Mm11KsubA_Mm_ENSG_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Mus musculus Mm11KsubA ENST Mm11KsubA_Mm_ENST_7 Soure CDF Win32 CDF Soure Probe Win32 Probe CDF&Map&Group Acc
Mus musculus Mm11KsubA ENTREZG